| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1352 |
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| Symbol | |
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| ID | 5869116 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 1508766 |
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| End bp | 1511222 |
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| Gene Length | 2457 bp |
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| Protein Length | 818 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641546455 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001667595 |
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| Protein GI | 167032364 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.455203 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGGGAC ATCGCACTCT AGAAGCGCCA AAGTTGCTCG GTATCACCTG GCCCTTCATC
GCCGTTGTGG TCCTCCAGGT GGCGTTGGGC AGCCTCAGCC TTTATACGCT CTCGGCCGTG
CGCGCGTATG TCGCGGGCGA AAGCCTGTGG TCCAAGGCGC AGAAAGACGC CATCTACTAC
CTCAACCTGT ACGCTGAAAC ACGCGACGAC AGCACCTACC AGCGTTATCG CCAGGCCATT
ACCGTACCTC AGGGCGACCA TCAGTTGCGC GAGGTGCTCG ACCGTCCCAA CCCTGATCTG
GAGGCCGCGC GCCAGGCAGT GCTGCAAGGG GGCAACCACC CTGACGATGT CGAGCGGATC
ATCTGGTTCT ACCGCAATTT CCGCAACGTC AGCTACATGC AGACGGCCAT CGACTACTGG
GATGTCGGCG ACGATTACCT GGCCAAGCTG GATGTGCTGG CTGGCGAGAT GCGCCAGCGC
TTGAGCAGTG GCCCGGTTGA TGCCGGCACG GTCAGCGACT GGAAGGCGCG TATCGTCACC
ATCAACGAAG GGGTCACGCC TGCGGCCAAA GCGTTCAGCG ATGCCTTGGG CGAAGGCTCG
CGCATGTTGC TGCGGGTGCT GCTGATCACT AACCTGCTGA CGGCAATGGT GCTGATTACC
ATTGCCTGGC GCCGATCCAG CAAGCTGCTG GCTCAGCGCC AGGCATTTGC CAGCGCCCTG
CAGGAAGAAA AAGAGCGGGC GCAGATCACG TTGCAAGCCA TCGGTGATGC GGTGATCACC
ACCGATGTGG AGGGCAGTAT CGGCTACATG AACCCGGCCG CCGAGCAATT GACTCACTGG
CAAGCCAGCC AGGCGCTGGG CCTGCCGCTG TCGGCAATGT TCAGCCTGGT TGACGAACAG
GCCGAGGAGG AGGGTCGCAG CCTGGTCGAG CAGGTGCTCA GTGGCAGTCT CAAGGGCGGC
GCGGAACACG CCAGGTTGAT TCAGCGGCTG GACGGCAGCA CCGTGTCAAT CAACCTGGTC
GGTTCGCCTA TCGTCAGTGA CGGCCAGGTC AGCGGTATCG TACTGGTGCT GCACGACATG
ACCCAGGAGC GGCAGTACAT CGCCAACCTG TCCTGGCAGG CCACCCACGA TGCGCTGACT
GGGCTGGCCA ACCGCCGCGA GTTCGAATAC CGCCTGGAGC AGGCGCTCAA CGGCCTGGCG
CGCCAGGCCG GGCGGCACTC GCTGATGTTC CTCGACCTCG ACCAGTTCAA GCTGGTCAAC
GACACTTGCG GCCATGCGGC TGGCGATGAG CTGTTGCGGC ACATTTGCGC CGTACTGCAG
TCCGGCCTGC GCGAAGGCGA TACCTTGGCG CGGCTGGGTG GCGACGAATT TGGCGTGTTG
CTGGAAAACT GCCCGCCCGA TCAGGCCGAG CGCATCGCCG AGCAATTGCG CCAGATGGTG
CAGAGCCTGC ACTTCGTGTG GAAAGGGCGG CCGTTCGTCA CCACGGTCAG CATCGGGCTG
GTGCACATGG CCCAGGCCCC GGGCACGCTG GAGGCTTCGC TGCGCGCTGC CGACATGGCG
TGCTACATGG CCAAGGAGAA GGGGCGCAAC CGTGTGCAGG TGTACCATGC CGATGACAGC
GAACTGTCCA TGCGCTTCGG CGAAATGGCC TGGATCCAGC GCTTGCATGT GGCTTTGGAA
GAAAACCGCT TCTGCCTGTA TGCCCAGGAA ATCGCCCCGC TGAAAAGCTT CGAAGGCCCG
GGGCACATCG AGATTCTGCT GCGCCTGCAC GACGAAAGCG GCCGTACCAT CCTGCCCAGC
AGCTTTATCC CGGCGGCCGA ACGCTACGGC CTGATGACCG CGCTTGACCG TTGGGTGGTG
CGCAATGTGT TTCTGGTCAT ACGCCAGTGC CTGGACGAAG GGCGCGAAGG GCCGTTGTCG
ATCTGTGCGA TCAACCTGTC GGGGTCGAGC ATCGGCGACG ACAAGTTTCT CGAATACCTG
CAGCGGTTGT TCGTCGAGTA CGCCATCCCG CCGCGAATGA TCTGCTTTGA AATTACCGAA
ACCAGTGCCA TCGCCAACCT GGGCAGCGCC ATCCGTTTCA TCAACGAGTT GAAGGGGCTG
GGTTGCCGCT TTTCGCTCGA TGATTTCTGC GCTGGCATGT CCTCGTTCGC CTATCTCAAG
CATTTGCCCG TGGATTACCT GAAGATTGAC GGCAGTTTCG TCAAGGACAT GCTCGACGAC
CCGGTCAACC GGGCCATGGT CGAGGTCATC AACCATATCG GCCATGTGAT GGGTAAGCGC
ACCATTGCCG AGTTCGTCGA AACACCCTTG ATCGAGCAGG CCTTGCAGGA AATTGGCGTG
GATTACGCCC AGGGCTACCT GATCGAACGC CCCCAGGTGT TCACCTGTGA CAGTCTGCAG
CGCCAACGGA TCGCCGCCCG GTCTCTGTTG CAGCGGGCAC CTGGCACGTT TCGCTAG
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| Protein sequence | MKGHRTLEAP KLLGITWPFI AVVVLQVALG SLSLYTLSAV RAYVAGESLW SKAQKDAIYY
LNLYAETRDD STYQRYRQAI TVPQGDHQLR EVLDRPNPDL EAARQAVLQG GNHPDDVERI
IWFYRNFRNV SYMQTAIDYW DVGDDYLAKL DVLAGEMRQR LSSGPVDAGT VSDWKARIVT
INEGVTPAAK AFSDALGEGS RMLLRVLLIT NLLTAMVLIT IAWRRSSKLL AQRQAFASAL
QEEKERAQIT LQAIGDAVIT TDVEGSIGYM NPAAEQLTHW QASQALGLPL SAMFSLVDEQ
AEEEGRSLVE QVLSGSLKGG AEHARLIQRL DGSTVSINLV GSPIVSDGQV SGIVLVLHDM
TQERQYIANL SWQATHDALT GLANRREFEY RLEQALNGLA RQAGRHSLMF LDLDQFKLVN
DTCGHAAGDE LLRHICAVLQ SGLREGDTLA RLGGDEFGVL LENCPPDQAE RIAEQLRQMV
QSLHFVWKGR PFVTTVSIGL VHMAQAPGTL EASLRAADMA CYMAKEKGRN RVQVYHADDS
ELSMRFGEMA WIQRLHVALE ENRFCLYAQE IAPLKSFEGP GHIEILLRLH DESGRTILPS
SFIPAAERYG LMTALDRWVV RNVFLVIRQC LDEGREGPLS ICAINLSGSS IGDDKFLEYL
QRLFVEYAIP PRMICFEITE TSAIANLGSA IRFINELKGL GCRFSLDDFC AGMSSFAYLK
HLPVDYLKID GSFVKDMLDD PVNRAMVEVI NHIGHVMGKR TIAEFVETPL IEQALQEIGV
DYAQGYLIER PQVFTCDSLQ RQRIAARSLL QRAPGTFR
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