| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1257 |
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| Symbol | |
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| ID | 5869017 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 1404798 |
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| End bp | 1407038 |
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| Gene Length | 2241 bp |
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| Protein Length | 746 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641546356 |
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| Product | (p)ppGpp synthetase I, SpoT/RelA |
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| Protein accession | YP_001667500 |
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| Protein GI | 167032269 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.648227 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.0100627 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTACAGG TGAGAGTGCA CCAGCCGGTC AACACTGACG GCAGTATCAA TCTCGAAGCA
TGGTTGGACC ATGTGGTAAG CGTCGATTCG GCATTGGATC GCGCAGCGCT GAAAGAAGCC
TGCGAGTTTG CTCATGAAGT AGAGAAAAAG GGCAACCCGG CCAAGCATTC CTGGGCGGAC
GGTACGTCGA GCTTCCAGGC GGGCCTGGAA ATCGCCGAAA TTCTCGCCGA TCTCAAGCTC
GACCAGGATT CCCTGGTGGC AGCGGTCATC TACCGCTCGG TGCGCGAGGG CAAAGTTACC
CTGGCCGAAG TCAGCCAGCG TTTTGGCCCG GTCGTGTCCA AGCTGATCGA CGGCGTGCTG
CGCATGGCCG CTATCAGTGC CAGCCTCAGC CCACGCCAGT CGCTGGTACT GGGCTCGCAG
GCGCAGGTCG AGAACCTGCG CAAGATGCTC GTGGCCATGG TCGACGACGT GCGGGTGGCA
TTGATCAAGC TGGCCGAACG CACCTGCGCA ATCCGTGCGG TCAAGGCCGC CGACGACGAA
AAACGCCTGC GCGTCGCGCG TGAGGTGTTC GACATCTATG CACCGCTTGC GCACCGCCTG
GGTATCGGCC ACATCAAGTG GGAGCTGGAA GACCTGTCCT TCCGCTACCT CGAACCCGAC
CAGTACAAAC AGATCGCCAA GCTGTTGCAC GAGCGCCGGT TGGACCGCGA GCGCTTCATC
AGCGACGTGA TGAACCAACT GCAGAACGAG CTGCTGGCCA CCGGTGTGAA CGCCGACATC
AGCGGCCGGG CGAAACATAT CTATTCGATC TGGCGCAAGA TGCAGCGCAA AGGCCTGGAA
TTCAGCCAGA TCTACGACGT GCGTGCAGTG CGTGTGCTGG TGCCGGAAAT TCGCGACTGC
TACACCGCGT TGGGTATCGT GCATACCTTG TGGCGGCACA TTCCCAAGGA GTTCGACGAC
TACATCGCCA ACCCCAAGGA GAACGGCTAC CGCTCGCTGC ACACAGCGGT AATCGGCCCC
GAGGGCAAGG TGCTGGAGGT GCAGATCCGT ACCCACGGCA TGCACGAAGA AGCCGAGCTT
GGGGTGTGCG CCCACTGGCG CTACAAGGGC ACCGACGTCA AGCCCAGCTC CAACCACTAT
GAAGAGAAGA TCTCCTGGCT GCGTCAGGTG CTGGAATGGC ATGAAGAGCT GGGCGACATC
GGTGGCCTGG CCGAGCAGTT GCGGGTCGAC ATCGAGCCCG ACCGGGTCTA TGTGTTCACC
CCTGACGGCC ACGCCATCGA CCTGCCCAAG GGCGCCACGC CACTGGACTT CGCCTACCGC
GTGCATACCG AGATCGGCCA CAACTGCCGG GGCGCGAAGA TCAACGGCCG TATCGTGCCG
CTGAACTACA GCCTGCAAAC CGGCGAGCAG GTGGAGATCA TCACCAGCAA GCATGGCAAC
CCCAGCCGTG ACTGGTTGAA CTCCAACCTG GGCTACGTCA CCACCTCGCG AGCGCGGGCC
AAGATCGTCC ACTGGTTCAA GCTGCAGGCG CGCGACCAGA ACGTCGCTGC CGGCAAGACC
TTGCTCGAGC GCGAGCTCAG CCGCCTGGGC CTGCCGCAAG TGGACTTCGA ACGCCTGGCC
GAGAAGACCA ACGTCAAGAC CGCCGAGGAC ATGTTCGCCT CGCTCGGTGC TGGCGACCTG
CGCCTGGCGC ACCTGGTCAA TGCCGCCCAG CAGTTGCTGG AGCCCGAGCG CATCGAGCAG
ATCGAGCTGG TGCCGCGCAA GCCAACCGGG CCTCGTACCG GCAAGCGTGG CGACATCCAG
ATCCAGGGTG TCGGCAACCT GCTGACGCAG ATGGCTGGTT GCTGCCAGCC GCTGCCGGGC
GATGCCATCG TCGGCTACAT CACCCAGGGC CGTGGCGTGA GCATTCACCG CCAGGACTGC
GCCTCGGTGC TGCAACTGGC AGGCAAGGAG CCGGAGCGCA TGATCCAAGT GAGCTGGGGG
CCGATCCCGG TGCAGACCTA CCCGGTCGAC ATCGTCATCC GTGCCTACGA CCGCCCGGGC
CTGCTGCGCG ACGTGTCGCA GGTGCTGTTG AACGAAAAGA TCAACGTATT GGCGGTGAAC
ACCCGCTCGA ACAAGGAAGA CAACACCGCG CTGATGTCGC TGACCATCGA GATTCCAGGC
CTGGACGCGC TGGGTCGCCT GCTGGGGCGG ATCTCGCAGC TGCCGAACAT CATCGAGACG
CGGCGTAATC GTACCCCTTG A
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| Protein sequence | MVQVRVHQPV NTDGSINLEA WLDHVVSVDS ALDRAALKEA CEFAHEVEKK GNPAKHSWAD
GTSSFQAGLE IAEILADLKL DQDSLVAAVI YRSVREGKVT LAEVSQRFGP VVSKLIDGVL
RMAAISASLS PRQSLVLGSQ AQVENLRKML VAMVDDVRVA LIKLAERTCA IRAVKAADDE
KRLRVAREVF DIYAPLAHRL GIGHIKWELE DLSFRYLEPD QYKQIAKLLH ERRLDRERFI
SDVMNQLQNE LLATGVNADI SGRAKHIYSI WRKMQRKGLE FSQIYDVRAV RVLVPEIRDC
YTALGIVHTL WRHIPKEFDD YIANPKENGY RSLHTAVIGP EGKVLEVQIR THGMHEEAEL
GVCAHWRYKG TDVKPSSNHY EEKISWLRQV LEWHEELGDI GGLAEQLRVD IEPDRVYVFT
PDGHAIDLPK GATPLDFAYR VHTEIGHNCR GAKINGRIVP LNYSLQTGEQ VEIITSKHGN
PSRDWLNSNL GYVTTSRARA KIVHWFKLQA RDQNVAAGKT LLERELSRLG LPQVDFERLA
EKTNVKTAED MFASLGAGDL RLAHLVNAAQ QLLEPERIEQ IELVPRKPTG PRTGKRGDIQ
IQGVGNLLTQ MAGCCQPLPG DAIVGYITQG RGVSIHRQDC ASVLQLAGKE PERMIQVSWG
PIPVQTYPVD IVIRAYDRPG LLRDVSQVLL NEKINVLAVN TRSNKEDNTA LMSLTIEIPG
LDALGRLLGR ISQLPNIIET RRNRTP
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