| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1256 |
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| Symbol | rumA |
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| ID | 5869016 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 1403343 |
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| End bp | 1404701 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641546355 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_001667499 |
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| Protein GI | 167032268 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.00437734 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCCAAGA AAAAAACCAA CAGTGGCCTG CGCTTCCAGC CGACCGGCGG CAACCGCAGC
GCCCAGATTC CCGTAGGCAA GAAACAACGC CTGGACATCG AGCGCCTGGC CGGTGACGGC
CGTGGCATCG CGTTCCACGA AGGGCGCACT TGGTTCGTCA GTGGTGCCCT GGCCGGCGAG
GCCGTGGAGG CGCGCGTGCT CAATGCCCGT GGCAAAGTGG TCGAGGCCCG CCTCGAGCGT
TTGCTGCAGG CAAGCCCCGA GCGCCGTGAG GCGCCGTGCC GCTACTACGA CCGCTGTGGT
GGCTGCAACC TGCAGCATCT GCCGCACCAA GCGCAGCTGG CGCTCAAGCA GCGCACCCTG
GCTGAGCAAC TGCAGCGGGT AGCCGGCGTG CAGCCCGAGG AATGGGCCGC CCCCTTGAGC
GGGCCGGAAT TCGGCTACCG GCGCCGGGCT CGCGTGGCCG TACGCTGGGA CATCAAGGCG
CGTCAACTGG AGGTAGGCTT CCGTGCCGAA GCCAGCCAGG ACATCATTGC CATCGATGAT
TGCGCTGTGC TGGTACAGCC CTTGCAGTCG ATTCTGCGGC ACTTGCCGAC GGTGCTGCGC
TCGTTGAACA AACCGCAGGC GCTAGGCCAT GTGGAGCTAT TCAGCGGCAC TGCCGAGGCG
GTGCTGGTGC GCCACGTGGC GCCGCTACCG GCCGAGGACC TGGCCAGGCT GCAGGCGTTC
TGCGAGCAGG CCAATGCCCA GCTGTGGTTG CAAGGCGAAG GTGAGCCGGC ACCCGTGGAC
CCGGCCGCGC AACTGGGCTT TGCCCTGGCG CCCTGGCAGC TGGAACTGGC CTGGCGCCCT
GGCGACTTCG TGCAAGTGAA TGCCCAGGTC AACACGGCCA TGATCGAGCA GGCCTTGGCC
TGGCTCGCAC CACAGGCCGA CGAGCGCGTG CTGGACCTGT TCTGTGGCCT GGGCAACTTC
GCCCTGCCGC TGGCCCGCCA GGCGCGCGAG GTGGTGGCAG TAGAAGGTGT GCAGGCCATG
GTCGATCGGG CAGCAGCCAA TGCCCGGAAC AACAATGTGC ATAACGCACG GTTTTTTCAG
GCCGATTTAT CGCAGCCTTT GGCAGGCACC GGATGGGCCG CCGAGGGCTT TTCTGCGGTA
CTCTTGGATC CACCGCGCGA CGGTGCTTTC GAGGTGGTGC AAGGCATCGC CCGCCTCAAG
GCCAGCAGGC TGGTCTATGT ATCGTGCAAC CCGGCCACGC TGGCGCGAGA CGCCCAGGTG
CTGGTCGGTC AGGGGTACCG GTTAAAAAGG GCCGGGATTC TCGACATGTT TCCTCAGACG
GCGCATGTCG AGGCCATGGC GTTATTCGAA GCGGGCTAG
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| Protein sequence | MSKKKTNSGL RFQPTGGNRS AQIPVGKKQR LDIERLAGDG RGIAFHEGRT WFVSGALAGE
AVEARVLNAR GKVVEARLER LLQASPERRE APCRYYDRCG GCNLQHLPHQ AQLALKQRTL
AEQLQRVAGV QPEEWAAPLS GPEFGYRRRA RVAVRWDIKA RQLEVGFRAE ASQDIIAIDD
CAVLVQPLQS ILRHLPTVLR SLNKPQALGH VELFSGTAEA VLVRHVAPLP AEDLARLQAF
CEQANAQLWL QGEGEPAPVD PAAQLGFALA PWQLELAWRP GDFVQVNAQV NTAMIEQALA
WLAPQADERV LDLFCGLGNF ALPLARQARE VVAVEGVQAM VDRAAANARN NNVHNARFFQ
ADLSQPLAGT GWAAEGFSAV LLDPPRDGAF EVVQGIARLK ASRLVYVSCN PATLARDAQV
LVGQGYRLKR AGILDMFPQT AHVEAMALFE AG
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