Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_1177 |
Symbol | |
ID | 5868937 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 1334689 |
End bp | 1335696 |
Gene Length | 1008 bp |
Protein Length | 335 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 641546277 |
Product | RNA polymerase sigma factor RpoS |
Protein accession | YP_001667421 |
Protein GI | 167032190 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.440638 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTCTCA GTAAAGAAGT GCCGGAGTTT GACATCGACG ATGACGTCCT CCTGATGGAG ACGGGTATCG TTTTGGAAAC GGATGTGGTG TCAGACGAAC CTGCTGTATC TTCGGTTCGG ACGAGGGCCA AGTCGGGCTC TTCGCTCAAG CAACACAAGT ACATCGATTA CAGCCGGGCG CTCGATGCCA CCCAGCTGTA TCTCAACGAG ATTGGTTTCT CGCCGCTGCT GTCGCCGGAA GAAGAAGTGC ACTTTGCGCG CTTGTCGCAA AAGGGCGATC CTGCCGGCCG CAAGCGCATG ATCGAAAGCA ACCTGCGCCT GGTTGTAAAA ATTGCCCGTC GTTACGTGAA CCGTGGCCTG TCGCTGCTCG ACCTGATCGA GGAGGGCAAC CTGGGGCTGA TCCGTGCGGT CGAGAAGTTC GACCCAGAGC GTGGTTTCCG GTTCTCGACC TATGCGACCT GGTGGATTCG CCAGACCATC GAACGGGCGA TCATGAACCA GACCCGCACC ATCCGCCTAC CGATCCATGT GGTCAAGGAA CTGAACGTCT ACCTGCGCGC TGCACGCGAG CTGACCCAGA AACTCGACCA CGAACCCTCG CCAGAAGAAA TCGCCACGTT GCTGGAGAAG CCGGTCGCCG AGGTCAAGCG CATGCTTGGC TTGAACGAGC GGGTGTCTTC GGTGGATGTG TCGCTTGGCC CGGACTCGGA CAAGACCCTG CTCGACACCT TGACCGACGA CCGCCCGACC GACCCGTGCG AGCTGCTGCA GGATGATGAC CTGTCGCAGA GCATCGATCA GTGGCTGGGT GAGTTGACCG ACAAGCAGCG TGAAGTGGTG GTGCGGCGCT TTGGCCTACG CGGGCATGAG AGCAGTACCC TTGAAGATGT TGGCCTGGAG ATCGGCCTGA CCCGGGAGCG GGTGCGGCAG ATTCAGGTAG AGGGGCTTAA GCGCTTGCGC GAGATCCTGG AGAAGAACGG CTTGTCCAGC GAGTCGTTGT TCCAGTAG
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Protein sequence | MALSKEVPEF DIDDDVLLME TGIVLETDVV SDEPAVSSVR TRAKSGSSLK QHKYIDYSRA LDATQLYLNE IGFSPLLSPE EEVHFARLSQ KGDPAGRKRM IESNLRLVVK IARRYVNRGL SLLDLIEEGN LGLIRAVEKF DPERGFRFST YATWWIRQTI ERAIMNQTRT IRLPIHVVKE LNVYLRAARE LTQKLDHEPS PEEIATLLEK PVAEVKRMLG LNERVSSVDV SLGPDSDKTL LDTLTDDRPT DPCELLQDDD LSQSIDQWLG ELTDKQREVV VRRFGLRGHE SSTLEDVGLE IGLTRERVRQ IQVEGLKRLR EILEKNGLSS ESLFQ
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