Gene PputGB1_1177 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_1177 
Symbol 
ID5868937 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp1334689 
End bp1335696 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content60% 
IMG OID641546277 
ProductRNA polymerase sigma factor RpoS 
Protein accessionYP_001667421 
Protein GI167032190 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value0.440638 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTCTCA GTAAAGAAGT GCCGGAGTTT GACATCGACG ATGACGTCCT CCTGATGGAG 
ACGGGTATCG TTTTGGAAAC GGATGTGGTG TCAGACGAAC CTGCTGTATC TTCGGTTCGG
ACGAGGGCCA AGTCGGGCTC TTCGCTCAAG CAACACAAGT ACATCGATTA CAGCCGGGCG
CTCGATGCCA CCCAGCTGTA TCTCAACGAG ATTGGTTTCT CGCCGCTGCT GTCGCCGGAA
GAAGAAGTGC ACTTTGCGCG CTTGTCGCAA AAGGGCGATC CTGCCGGCCG CAAGCGCATG
ATCGAAAGCA ACCTGCGCCT GGTTGTAAAA ATTGCCCGTC GTTACGTGAA CCGTGGCCTG
TCGCTGCTCG ACCTGATCGA GGAGGGCAAC CTGGGGCTGA TCCGTGCGGT CGAGAAGTTC
GACCCAGAGC GTGGTTTCCG GTTCTCGACC TATGCGACCT GGTGGATTCG CCAGACCATC
GAACGGGCGA TCATGAACCA GACCCGCACC ATCCGCCTAC CGATCCATGT GGTCAAGGAA
CTGAACGTCT ACCTGCGCGC TGCACGCGAG CTGACCCAGA AACTCGACCA CGAACCCTCG
CCAGAAGAAA TCGCCACGTT GCTGGAGAAG CCGGTCGCCG AGGTCAAGCG CATGCTTGGC
TTGAACGAGC GGGTGTCTTC GGTGGATGTG TCGCTTGGCC CGGACTCGGA CAAGACCCTG
CTCGACACCT TGACCGACGA CCGCCCGACC GACCCGTGCG AGCTGCTGCA GGATGATGAC
CTGTCGCAGA GCATCGATCA GTGGCTGGGT GAGTTGACCG ACAAGCAGCG TGAAGTGGTG
GTGCGGCGCT TTGGCCTACG CGGGCATGAG AGCAGTACCC TTGAAGATGT TGGCCTGGAG
ATCGGCCTGA CCCGGGAGCG GGTGCGGCAG ATTCAGGTAG AGGGGCTTAA GCGCTTGCGC
GAGATCCTGG AGAAGAACGG CTTGTCCAGC GAGTCGTTGT TCCAGTAG
 
Protein sequence
MALSKEVPEF DIDDDVLLME TGIVLETDVV SDEPAVSSVR TRAKSGSSLK QHKYIDYSRA 
LDATQLYLNE IGFSPLLSPE EEVHFARLSQ KGDPAGRKRM IESNLRLVVK IARRYVNRGL
SLLDLIEEGN LGLIRAVEKF DPERGFRFST YATWWIRQTI ERAIMNQTRT IRLPIHVVKE
LNVYLRAARE LTQKLDHEPS PEEIATLLEK PVAEVKRMLG LNERVSSVDV SLGPDSDKTL
LDTLTDDRPT DPCELLQDDD LSQSIDQWLG ELTDKQREVV VRRFGLRGHE SSTLEDVGLE
IGLTRERVRQ IQVEGLKRLR EILEKNGLSS ESLFQ