| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1173 |
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| Symbol | truD |
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| ID | 5868933 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 1331024 |
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| End bp | 1332082 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641546273 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_001667417 |
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| Protein GI | 167032186 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.378018 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGAAC TGGAACTGCT GGGCCCGCGC GCATCGGGCG AACCGTTGGG CACCGCCGTA
CTCAAGGCGG TGGCCGAGGA TTTCCAGGTC GACGAAGTGC TGGATATCCC CCTGTCGGGG
CAGGGCGAGC ACCTGTGGCT GTGGGTCGAG AAGCGTGACC TGAACACTGA AGAGGCCGCC
CGCCGCCTGG CCCGTGCCGC AGGCGTGCCC GTGCGCAGCA TCAGCTATGC CGGCCTGAAG
GACCGCCAGG CGCTGACCCG CCAGTGGTTC AGCCTGCACC TGCCGGGCAA GGCCGACCCG
GACCTGTCGC GGGCCGAGGA TGCCAGCCTG CGTGTGCTCA AGCAGGTGCG CCACCTGCGC
AAGCTCCAGC GCGGCGCGCA TTCGGCCAAC GGTTTTACCC TGCGCCTGAC GGCTCTGGCA
GCCGATCACC AGGCGCTGGA CACGCGCCTG GAACAGCTGA AGCAGAACGG TGTGCCCAAC
TATTTTGGCA CCCAGCGCTT CGGCCACGGC GGTGGTAACG TGCATGACGC CCTCGAGTGG
GCTGCCCGCA AGGCTTTGCC TGAGCAGCGC AACGTGCGTT CGCGGCTGCT TTCGGCTGGG
CGCAGCTTCC TGTTCAATCA ACTGCTGGCT GCGCGTGTCG CTGACGGCAG CTGGGCTCGC
GCCCAGGTCG GCGACCTGCT GGCGTTCACT GACAGCCGTA GTTTCTTCCC GGCCGGTGAG
GCGGAATGTG CCGACCCGCG CCTGGCGATT CTCGATCTGC ACCCGACTGG CCCTATGTGG
GGCGAGGGCG CCTCGCCTGC TGGCGCAGCC ACTGCCCAGC TGGAAAACGC CGTTGGCGCA
CGGCAGCCGG CACTTTGCCA GTGGTTGGCC CAGGCGGGCA TGGATCACGA ACGGCGAATT
CTGCGGCTCC CTATTGGCGG CCTGACGTGG CATTATCCCG AGCCTGATAT CCTGCAACTG
GAATTCGTCC TGCCGGCCGG ATGCTTCGCC ACCGTGGTGG TGCGTGAAGT CGTGGATCTG
GTGTCGGCAG GGCAGACGGA CAGCCCATGC GTATTCTGA
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| Protein sequence | MTELELLGPR ASGEPLGTAV LKAVAEDFQV DEVLDIPLSG QGEHLWLWVE KRDLNTEEAA
RRLARAAGVP VRSISYAGLK DRQALTRQWF SLHLPGKADP DLSRAEDASL RVLKQVRHLR
KLQRGAHSAN GFTLRLTALA ADHQALDTRL EQLKQNGVPN YFGTQRFGHG GGNVHDALEW
AARKALPEQR NVRSRLLSAG RSFLFNQLLA ARVADGSWAR AQVGDLLAFT DSRSFFPAGE
AECADPRLAI LDLHPTGPMW GEGASPAGAA TAQLENAVGA RQPALCQWLA QAGMDHERRI
LRLPIGGLTW HYPEPDILQL EFVLPAGCFA TVVVREVVDL VSAGQTDSPC VF
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