| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1161 |
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| Symbol | dnaE |
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| ID | 5868921 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 1316081 |
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| End bp | 1319605 |
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| Gene Length | 3525 bp |
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| Protein Length | 1174 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641546261 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_001667405 |
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| Protein GI | 167032174 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0775975 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGTTC CCTTCGTTCA CCTGCGCGTC CACTCCGAAT TCTCGCTGGT CGACGGTCTG
GTGCGGATCA AACCGCTGGC CAAGGCGCTG GCCGGGATGA ACATGCCAGC GGTGGCGATC
ACCGACCAGA GCAACATGTG CTCGCTGGTG AAGTTCTACA AAACGGCCAT GGGCGCCGGC
ATCAAACCGA TCTGCGGTGC CGACCTGTGG CTGGCCGGTG CCGACCCGGA AGCCCCGCTG
TCGCGCATTT GCTTCCTGGC CATGAACCCC CAGGGCTATC GCAACCTCAC CGAATTGATC
TCGCGGGGCT GGACCGACGG CCAGCGAAAC GGCCTGGTCA TCCTCCAGCG TGAATGGATC
GCCCCCGCCA GCGAAGGCCT GATTGCCCTG TCTGCGGGCA AGGAAGGCGA CATCGGCATG
GCCTTGCTCA ATGGTCGAGA CGATGAAGCC CAAGCCCTGC TGCAAGACTG GATGGGCATG
TTCCCCGAGC GCTTCTATGT AGAAGTACAG CGCACCAATC GCGCCCGCGA CGAAGAATAC
GTGCACGCTG CGGTAGCCCT GGCCGACAAG TTTGGCGCGC CGCTGGTGGC CACCAACGAC
GTGCGTTTCA TCAAGCAGTC GGACTTCGAC GCCCACGAAA CCCGTGTATG CATCGGCGAA
GGCTGGACCC TCGACGACCC ACGCCGCCCG CGTGGCTACA GCGACCAGCA GTACCTGAAG
TCGGCCGAGG AAATGGCCGA GTTGTTCAGC GACCTGCCCG ACGCCATCGC CAACACGGTC
GAAATCGCCA AGCGCTGCAA CATCCAGGTG CAGTTGGGCA AATACTTCCT GCCTGACTTC
CCGACGCCCA ACGGCATGGG CATCGACGAT TACCTGCGGC ATGTGTCCTA CGAGGGCCTT
GAAGAGCGCC TGGCGGTGCT GTGGCCGAAA GACACCACGC CCAATTACGA AGAGAAGCGC
CAGGTTTACC TCGACCGCCT GAAGTTCGAG CTGGATATCA TCATCCAGAT GGGCTTCCCC
GGTTACTTCC TGATCGTCAT GGACTTCATC AAGTGGGCCA AGAACAACGA TGTGCCGGTC
GGCCCGGGGC GGGGGTCGGG TGCCGGCTCG CTGGTGGCCT ACGTACTGAA GATCACCGAC
CTTGACCCGC TGGCCTATGA CCTGCTGTTC GAGCGCTTCC TGAACCCTGA ACGTGTTTCC
ATGCCCGACT TCGACGTCGA CTTCTGCATG GACGGCCGCG ACCGGGTCAT CGACTACGTG
GCCGAGGCCT ACGGCCGTAA CGCGGTAAGC CAGATCATCA CCTTCGGTAC CATGGCCGCC
AAGGCGGTGG TGCGTGACGT GGCGCGGGTG CAGGGCAAGT CCTACGGCCT GGCCGATCGC
CTGTCGAAGA TGATCCCGTT CGAAGTGGGC ATGACCCTGG AGAAGGCCTA CGAGCAGGAA
GAAATCCTGC GCGACTTCCT CAAAAGCGAC GAAGACGGCC GCGAAATCTG GGACATGGCC
CTGAAGCTGG AAGGTGTGAC CCGGGGTACC GGCAAGCACG CCGGTGGTGT GGTTATCGCG
CCGACCAAGC TTACCGATTT TTCGCCGATC GCTTGTGATG AAGAAGGCGG TGGCCTGGTC
ACCCAGTTCG ACAAGGATGA CGTCGAGGCC GCCGGCCTGG TGAAGTTCGA CTTCCTCGGC
CTGCGTACCC TGACCATCAT CAAGTGGGCG ATGGAGATCA TCAACCGCGA GCAGGCCAAG
AACAACCTGC CCGACTTGAA CATCGACTTC ATCCCGCTGG ATGACCGCAA GACCTACGAG
CTGTTGCAGA AGGCCGAAAC CACGGCCGTG TTCCAGCTTG AATCGCGGGG CATGAAGGAG
CTGATCAAGA AGCTCAAGCC CGACTGCCTG GAAGACCTCA TCGCACTGGT GGCACTGTTC
CGCCCCGGCC CGCTGCAATC GGGCATGGTG GACGACTTCA TCAACCGCAA GCACGGCCGC
GCCGAGCTGG CCTACCCACA TGCGGACTAC CAGTACGAAG GCCTCAAGCC GGTACTGGCG
CCCACCTACG GCATCATCCT GTACCAGGAA CAGGTGATGC AGATCGCCCA GGTGATGGCA
GGCTATACCC TGGGCGGCGC CGACATGCTG CGCCGGGCGA TGGGTAAGAA AAAGCCCGAG
GAAATGGCCA AGCAGCGCGG TGGTTTCATC GAAGGTTGCG TGGCCAACAA TATCGATGCG
GACCTGGCTG GTAACATCTT CGACCTGGTA GAAAAGTTCG CCGGTTACGG TTTCAACAAA
TCTCACTCCG CAGCCTATGG CCTGGTGTCT TACCAGACCG CCTGGCTGAA AACCCACTAC
CCGGCGCCAT TCATGGCTGC GGTACTGTCG GCGGATATGC ACAACACCGA CAAGGTGGTG
GTGCTGGTAG AAGAAGTTCG CAGCATGAAG TTGCGTCTGG ACGCGCCAGA TGTGAACTTC
TCCGACTTCA AGTTCACCGT CAACAACGAC GGCCGTATCG TCTACGGCCT GGGTGCCATC
AAGGGCGTCG GCGAAGGGCC GGTGGAAGCA ATCGTCGAGG CCCGTGCCCA GGGCGGCCCG
TTCAAGGACC TGTTCGACTT CTGTGACCGC ATCGATCTCA AACGGGTGAA CAAGCGTACC
CTCGATGCGC TGGTGCGCAG CGGCGCGCTG GACCGGCTGG GCCCGCACTT CCATGACGAG
ATAAAGGCCT ACCAGGCCAA CATCGACATC AACCGTGCGA CCTTGCTCTC GGCGCTGGGT
GAGGCCATCA AGGCTGCCGA GCAAGCGGCC CACACCGCTG ACAGCGGTCA CGTCGATCTG
TTCGGCAGCA TGTTCGACGA GGCGCAAGTC GACGTCTATG CCAACCACCG CAAGGTCCGC
GAGCTGACCC TCAAGGAGCG CTTGAAGGGC GAAAAAGACA CCCTTGGCCT GTACCTGACC
GGTCACCCGA TCGACGAGTA CGAGACCGAG ATCCGCCGCT TCGCCCGCCA GCGCATCATC
GACCTCAAGC CGTCGCGCGA AACCCAGACC ATCGCCGGCA TGATCATCGC CTTGCGGGTG
ATGAAGAACA AAAAGGGCGA CAAGATGGGC TTCGTTACCC TGGATGACCG CTCCGGGCGC
ATAGAGGCTT CCCTGTTCGC AGATGCCTAC ATCGCGGCAC AGTCCTTGCT GCAGGCCGAT
GCCATGGTGG TGGTCGAAGG CGAGGTCAGC AACGACGACT TCTCCGGCGG CCTGCGCCTG
CGGGTTAAGC AGGTCATGAC CATGGAAGAC GCACGCACCA AGCTGGCCGA GAGCCTGCGC
CTGAAAGTGG CGCACGATGC CCTGAAGGGC GACCGGCTGA AGTGGCTGGG TGAGCTGATC
ACCCGCCATC GCGGTGCTTG CCCGATCACC CTGGAGTACA CCGGCAGCGA CGCCAAGGCC
ATGTTGCAGT TCGGCGAGCA GTGGGCGATC GACCCGGCCG ACGGGCTGAT TCAGGCGCTG
CGTGACCAGT TCGGGCGTGA GAACGTCTTC CTGCAATATC GTTGA
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| Protein sequence | MSVPFVHLRV HSEFSLVDGL VRIKPLAKAL AGMNMPAVAI TDQSNMCSLV KFYKTAMGAG
IKPICGADLW LAGADPEAPL SRICFLAMNP QGYRNLTELI SRGWTDGQRN GLVILQREWI
APASEGLIAL SAGKEGDIGM ALLNGRDDEA QALLQDWMGM FPERFYVEVQ RTNRARDEEY
VHAAVALADK FGAPLVATND VRFIKQSDFD AHETRVCIGE GWTLDDPRRP RGYSDQQYLK
SAEEMAELFS DLPDAIANTV EIAKRCNIQV QLGKYFLPDF PTPNGMGIDD YLRHVSYEGL
EERLAVLWPK DTTPNYEEKR QVYLDRLKFE LDIIIQMGFP GYFLIVMDFI KWAKNNDVPV
GPGRGSGAGS LVAYVLKITD LDPLAYDLLF ERFLNPERVS MPDFDVDFCM DGRDRVIDYV
AEAYGRNAVS QIITFGTMAA KAVVRDVARV QGKSYGLADR LSKMIPFEVG MTLEKAYEQE
EILRDFLKSD EDGREIWDMA LKLEGVTRGT GKHAGGVVIA PTKLTDFSPI ACDEEGGGLV
TQFDKDDVEA AGLVKFDFLG LRTLTIIKWA MEIINREQAK NNLPDLNIDF IPLDDRKTYE
LLQKAETTAV FQLESRGMKE LIKKLKPDCL EDLIALVALF RPGPLQSGMV DDFINRKHGR
AELAYPHADY QYEGLKPVLA PTYGIILYQE QVMQIAQVMA GYTLGGADML RRAMGKKKPE
EMAKQRGGFI EGCVANNIDA DLAGNIFDLV EKFAGYGFNK SHSAAYGLVS YQTAWLKTHY
PAPFMAAVLS ADMHNTDKVV VLVEEVRSMK LRLDAPDVNF SDFKFTVNND GRIVYGLGAI
KGVGEGPVEA IVEARAQGGP FKDLFDFCDR IDLKRVNKRT LDALVRSGAL DRLGPHFHDE
IKAYQANIDI NRATLLSALG EAIKAAEQAA HTADSGHVDL FGSMFDEAQV DVYANHRKVR
ELTLKERLKG EKDTLGLYLT GHPIDEYETE IRRFARQRII DLKPSRETQT IAGMIIALRV
MKNKKGDKMG FVTLDDRSGR IEASLFADAY IAAQSLLQAD AMVVVEGEVS NDDFSGGLRL
RVKQVMTMED ARTKLAESLR LKVAHDALKG DRLKWLGELI TRHRGACPIT LEYTGSDAKA
MLQFGEQWAI DPADGLIQAL RDQFGRENVF LQYR
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