| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1141 |
|---|
| Symbol | |
|---|
| ID | 5868900 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 1294138 |
|---|
| End bp | 1295784 |
|---|
| Gene Length | 1647 bp |
|---|
| Protein Length | 548 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641546240 |
|---|
| Product | Na+/H+ antiporter |
|---|
| Protein accession | YP_001667385 |
|---|
| Protein GI | 167032154 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0025] NhaP-type Na+/H+ and K+/H+ antiporters |
|---|
| TIGRFAM ID | [TIGR00831] Na+/H+ antiporter, bacterial form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.397412 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.678529 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGTCCG CCTACACCGT CCTCATCCTG CTGACGCTGG TCAGCCTGTC GAAGCTGGTC
GGCCGCATGA TTCCGCTTCC CTTGCCGCTG GTGCAGATCG CCGCCGGTGC CTTGCTGGCC
TTGCCGACAC TGGGCCTGCA TGTGGCCCTT GACCCCGAAC TGTTCCTGTT CCTGTTCTTG
CCGCCGCTGC TGTTTGCCGA CGGCTGGCGC ATCCCCAAGC GGGAGCTGTG GCGCATTCGC
GGGCCCGTGG TGGCGCTGGC CGTCGGGCTG GTCCTTTTCA CCGTGGTTGG GGCTGGATAC
TTCATTCACT GGCTGCTGCC GAGCATCCCG TTGCCAGTGG CCTTCGCCCT GGCAGCGGTA
CTTTCGCCAA CCGACGCCGT GGCGGTTTCG GCCATTGCCC AAGACCGCCT GCCCACGCCG
CTGATGCACA TGCTGCAGGG CGAAGCCCTG ATGAACGATG CGTCGGGCCT GGTGACCTTC
AAGTTTGCCT TGGCAGCGGC GATTACCGGG GTGTTCTCGC TGACCGATGC AAGCTTCAGT
TTTGTCCTGG TCGCGCTTGG CGGTCTGGCG GTGGGTGTGG GCTTGAGCTG GCTGGTCGGC
CGCCTGCGCG CCTGGATGAT CGCTCGCGGC TGGGACGACC CAGCCACGCA TGTGGTGTTC
ATGCTGCTGT TGCCATTTGC TGCCTATGTG CTGGCCGAGC GTCTTGGCGT GTCGGGCATC
CTTTCGGCGG TGGCGGCGGG CATGATGCAG AGCTGGCTCG ACCTGCTGCC ACGGCAAACC
AGCACCCGCC TGCTCAACCG CAGCGTCTGG TCGCTGCTGG AGTTCGCCTT CAACGGCCTG
ATCTTCCTGC TGTTGGGCCT GCAGTTGCCG GACATCATCA AGGCGGTGGT CAGCCACGAA
CCCACCGTCT GGCCGACCCT GGCCTACCGC TGCCTGGATG TGGTGGCGAT CTTTGCCGCG
CTTATCCTGC TGCGTTACAT CTGGGTGCAG AGCATCTGGC GCTCGATCGG CGTGGTGCGT
CGCTGGCGTG GCAAACCGGC GCTGGTGCTG ATGCCTACAG CGCGCTCCTG CTGGCTGCTG
ACCCTGGGCG GGGTGCGGGG TGCGGTGACC TTGGCAGGTG TGATGTCGGT GCCGTTGCTG
ATGGGGGCGG GCAAGGCCTT CCCGGAACGT GACTTGTTGA TCTTCATTGC CGCCGGGGTG
ATCCTGCTGT CGTTGATCAG TGCCTGTATC GCGTTGCCGT TGTTGCTGCG CGGGGTGACC
AAGAGCCCGG ACGAGCGCCT GCGCCAGGAA GTGCAGGAAG CCTGGCGGCG CACGGCCGAA
GCGGCGATCC ATGCCCTGGA GGCAGAGGAG GTGATCGACA GCAATGCGCC GCAGGACGCC
GCGCAGGCGA CCTTGGCGAC CGAACTGAAA GCGCGGTTGA TGGCAGAATA CCGGGATGAG
CTGGACAGCT ACAACGACAG CGCCGAAGCC AAGGCGCTGG CCGAGCAGAT GGACCTGCTG
GAGCGGCATT TGCGCTTGCG TGCACTGAGG GCGCAGCGGT TGGAGCTATA CAACCTGCAT
CGCCAGCACC TGGTCGGTGA TGAAGTGGTG CGCCAGGTCC TGGGGGAGCT GGACATGAGT
GAAGCGAACC TTGGGCAAGT CAGGTAG
|
|---|
| Protein sequence | MQSAYTVLIL LTLVSLSKLV GRMIPLPLPL VQIAAGALLA LPTLGLHVAL DPELFLFLFL
PPLLFADGWR IPKRELWRIR GPVVALAVGL VLFTVVGAGY FIHWLLPSIP LPVAFALAAV
LSPTDAVAVS AIAQDRLPTP LMHMLQGEAL MNDASGLVTF KFALAAAITG VFSLTDASFS
FVLVALGGLA VGVGLSWLVG RLRAWMIARG WDDPATHVVF MLLLPFAAYV LAERLGVSGI
LSAVAAGMMQ SWLDLLPRQT STRLLNRSVW SLLEFAFNGL IFLLLGLQLP DIIKAVVSHE
PTVWPTLAYR CLDVVAIFAA LILLRYIWVQ SIWRSIGVVR RWRGKPALVL MPTARSCWLL
TLGGVRGAVT LAGVMSVPLL MGAGKAFPER DLLIFIAAGV ILLSLISACI ALPLLLRGVT
KSPDERLRQE VQEAWRRTAE AAIHALEAEE VIDSNAPQDA AQATLATELK ARLMAEYRDE
LDSYNDSAEA KALAEQMDLL ERHLRLRALR AQRLELYNLH RQHLVGDEVV RQVLGELDMS
EANLGQVR
|
|---|
| |