| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1089 |
|---|
| Symbol | |
|---|
| ID | 5868848 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 1236744 |
|---|
| End bp | 1237655 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641546188 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001667333 |
|---|
| Protein GI | 167032102 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.179678 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 0.456991 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACAC TGCGCGGCCT ATCCAACCTG CTGTACCGGC GCCCCAACCT GTACCTGGCA
CTGCTATTGA TACCGCCGCT GACCTGGTTC GGCGCAATCT ACCTGGGCTC GCTGCTGAAC
CTGCTGTGGC AGGGTTTCTA TACCTTCGAC GATTTCACCA TGGCGGTGAC CCCGGACCTG
ACCCTGGGCA ACTTCGCCGC GCTGTTCAAC CCGTCGAACT TCGACATCAT CCTGCGCACC
CTGGGCATGG CAGTGGCGGT GTCGCTGGCC AGTGCGGTGC TGGCCTTCCC CATCGCCTAC
TACATGGCGC GCTATACCAG CGGCAAGACC AAGGCATTTT TCTACATCGC GGTGATGATG
CCGATGTGGG CCAGCTATAT CGTCAAAACC TATGCCTGGA CCCTGCTGTT GGCCAAGGGC
GGCGTGGCCC AGTGGTTCGT CCAGTTGTTG CACCTGGATG CCCTGCTGCA GGCGCTGTTG
GCGGTGCCTG GCGTGGGCGG CAGCACGCTG TCGACCTCGC ACCTGGGGCG CTTTCTGGTG
TTCGTGTACA TCTGGCTGCC GTTCATGATC CTGCCCATCC AGGCCTCGCT GGAGCGCTTG
CCACCGTCGC TGCTGCAAGC TTCGGCCGAC CTCGGCGCAC GGCCGGGGCA AACGTTCGTG
CAGGTGATCC TGCCGTTGTC GATCCCCGGC ATCGCCGCCG GCTCGATCTT CACCTTCTCG
CTCACCCTGG GCGACTTCAT CGTGCCGCAA CTGGTCGGCC CGCCCGGCTA CTTCATCGGC
AGCATGGTCT ATGCCCAGCA GGGGGCGATT GGCAACATGC CGATGGCTGC CGCGTTCACC
TTGGTGCCCA TCGTGCTGAT CGCGGTGTAC CTGTCCATCG TCAAGCGCCT GGGGGCCTTC
GATGCACTCT GA
|
|---|
| Protein sequence | MSTLRGLSNL LYRRPNLYLA LLLIPPLTWF GAIYLGSLLN LLWQGFYTFD DFTMAVTPDL
TLGNFAALFN PSNFDIILRT LGMAVAVSLA SAVLAFPIAY YMARYTSGKT KAFFYIAVMM
PMWASYIVKT YAWTLLLAKG GVAQWFVQLL HLDALLQALL AVPGVGGSTL STSHLGRFLV
FVYIWLPFMI LPIQASLERL PPSLLQASAD LGARPGQTFV QVILPLSIPG IAAGSIFTFS
LTLGDFIVPQ LVGPPGYFIG SMVYAQQGAI GNMPMAAAFT LVPIVLIAVY LSIVKRLGAF
DAL
|
|---|
| |