| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1073 |
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| Symbol | xerD |
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| ID | 5868832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 1219642 |
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| End bp | 1220538 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641546172 |
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| Product | site-specific tyrosine recombinase XerD |
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| Protein accession | YP_001667317 |
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| Protein GI | 167032086 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.344511 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGCCC TCGATCACCC CCTGATAGAC CAGTTTCTCG ACGCCCTGTG GCTTGAAAAA
GGCCTGTCCG ACAACACCCG AGTGTCCTAC CGCAGTGACC TGGCCTTGTT CAATGGCTGG
CTGCAGGAGC AGGCAGTGTC GCTGCCGGAT GCCGGCCGCG AGCTGATCCT CGATCACCTG
GCCTGGCGCC TCGACCAAGG CTACAAGCCG CGCTCCACGG CGCGCTTCCT GTCCGGCCTG
CGTGGTTTTT TCCGCTACCT GCTGCGGGAA AGGCTGGTGG CCATCGACCC GACCTTGCAG
GTCGACATGC CACAACTGGG CAAACCACTG CCCAAGTCAC TCTCCGAAGC CGATGTCGAA
GCCCTGCTGC AGGCACCGGA CCTGGGCGAA GCCATCGGCC AGCGCGACCG TGCCATGCTC
GAAGTGCTCT ATGCCTGCGG CCTGCGCGTC ACCGAGCTGG TCAGCCTGAC CCTCGACCAG
GTCAACCTGC GCCAGGGTGT GCTGCGGGTA ATGGGCAAGG GCAGCAAGGA GCGCCTGGTG
CCCATGGGTG AAGAGGCGGT GGTGTGGCTG GAACGCTACC AGCGCGATGG CCGCGCCGAA
CTGCTCAACG GCCGCCCCAG CGACGTGCTG TTCCCCAGCC TGAGAGGCGA GCAGATGACT
CGCCAGACCT TCTGGCACCG CATCAAGCAT CATGCCCGGG TTGCTGGCAT CGACAAGCCG
CTGTCGCCGC ACACCTTGCG GCATGCCTTC GCCACCCACC TGCTCAACCA CGGTGCCGAC
TTGCGTGTGG TGCAGATGCT GCTGGGCCAC AGCGACCTGT CGACCACGCA GATCTATACC
CACGTCGCCA AGGCCCGCCT GCAGCAGTTG CACGCCCAGC ACCACCCGCG TGGATGA
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| Protein sequence | MPALDHPLID QFLDALWLEK GLSDNTRVSY RSDLALFNGW LQEQAVSLPD AGRELILDHL
AWRLDQGYKP RSTARFLSGL RGFFRYLLRE RLVAIDPTLQ VDMPQLGKPL PKSLSEADVE
ALLQAPDLGE AIGQRDRAML EVLYACGLRV TELVSLTLDQ VNLRQGVLRV MGKGSKERLV
PMGEEAVVWL ERYQRDGRAE LLNGRPSDVL FPSLRGEQMT RQTFWHRIKH HARVAGIDKP
LSPHTLRHAF ATHLLNHGAD LRVVQMLLGH SDLSTTQIYT HVAKARLQQL HAQHHPRG
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