| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1044 |
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| Symbol | |
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| ID | 5868804 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 1192349 |
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| End bp | 1193797 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641546145 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001667290 |
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| Protein GI | 167032059 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCCCT ATCGCCAGGC ACGGCTGAGC GGGGTGGCCA TGGCTGCGAC GGAGCAGGGT
TGGCAGTTGT GGCTAAGGAC CGACGCCGAC AGCGCGCAGT TGCAGGAGCT GTTGCGCGTG
CATGGCCAAC CCTGCGCGCT TGAATACCTG GAGCCCGCAG TATTCGATGA GCGCTTGGGC
CAGCTGTACC AGGCCGGCGA TGCGGCCACT GCAGCGCTGA TCGAAGGGAT TGGCGACCAG
GTCGACCTGG ACAGCCTGAT GAGCGAGATG CCGCGCATCG AAGACTTGCT GGAAAGCGAC
GACGAAGCCC CGGTAATCCG CTTGATCAAC GGCCTGTTCG GCCAGGCGCT GCGCCTGCGT
GCCTCGGACA TTCATATCGA GACGTTCGAA CAAAGCCTGG TGGTGCGCCT GAGGGTCGAT
GGCCACCTGC GCGAAGTGCT GCGCCCGCCG CGAGCGTTGT CGGCGATGCT GGTGTCACGG
ATCAAGGTCA TGGCCCGCCT GGACATCGCA GAAAAACGCC AGCCCCAGGA TGGGCGCATC
ACTTTGCGCG CGGCGGGACG CGAAGTGGAC GTGCGGGTCT CGACCTTGCC CGGCATCCAT
GGCGAGCGGG TGGTGATGCG GGTACTCGAC AAGCAGGCCA GCCTGTTGGC GCTGGAAAAC
CTGGGCATGC CGGCGGCGGT GTTGCAGGGC CTGCGCAGCT GCCTGGCGCG GCCCAACGGT
ATCGTGTTGT CCACTGGGCC AACCGGTTCG GGCAAGACCA CCACCCTGTA CGCCAGCCTC
AACAGCCTCA ACGACGGCAG CCGCAACATC CTCACCGTTG AGGACCCGGT GGAGTATGCC
ATCGCAGGCA TTGGCCAGAC CGCCATCAAC CCGCGTGCCG GGCTGACGTT CGCCAGTGGC
CTGCGCGCCA TCCTGCGTCA GGACCCGGAC GTGATCATGC TCGGCGAAAT CCGCGACCAG
GAGACCGCAC AGATCGCCGT GCAGGCCAGC CTCACCGGCC ATCTGGTGCT CTCTACCCTG
CACACCAACA GTGCCGTGGG CGCGGTGACC CGGCTACGTG ACATGGGTAT CGAGCCGTTC
CTGATTGCCT CGTGTCTGCG CGGTGTACTG GCCCAGCGCC TGGTGCGGCG CTTGTGCAGT
TGTGCCGTGG CGCACCCATT GCAACCGGCC GAGCGTGACC TGTGGCCAGA GCTGGCTGCA
CTGGGCAGCA GTTACCACGC GGTCGGCTGC GAGCAGTGCC AGGGCAGCGG ATACATCGGC
CGCCTGGGCC TGTACGAATT CATCGAACTG GACGCCGGGC TGATCGGCCT GTTGTATGAC
GGCGCCAGCG AACTGGCCAT GCAGGCCTAC CTCGGTGAGC GCCGGCAAAG CCTGGTGGCG
ATGGCCAGCG AGTGCCTGGC CCGTGGCGAG ACCAGCCTGG CCGAAGTGCT GCGCGCGGTG
CAGGGCTAA
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| Protein sequence | MLPYRQARLS GVAMAATEQG WQLWLRTDAD SAQLQELLRV HGQPCALEYL EPAVFDERLG
QLYQAGDAAT AALIEGIGDQ VDLDSLMSEM PRIEDLLESD DEAPVIRLIN GLFGQALRLR
ASDIHIETFE QSLVVRLRVD GHLREVLRPP RALSAMLVSR IKVMARLDIA EKRQPQDGRI
TLRAAGREVD VRVSTLPGIH GERVVMRVLD KQASLLALEN LGMPAAVLQG LRSCLARPNG
IVLSTGPTGS GKTTTLYASL NSLNDGSRNI LTVEDPVEYA IAGIGQTAIN PRAGLTFASG
LRAILRQDPD VIMLGEIRDQ ETAQIAVQAS LTGHLVLSTL HTNSAVGAVT RLRDMGIEPF
LIASCLRGVL AQRLVRRLCS CAVAHPLQPA ERDLWPELAA LGSSYHAVGC EQCQGSGYIG
RLGLYEFIEL DAGLIGLLYD GASELAMQAY LGERRQSLVA MASECLARGE TSLAEVLRAV
QG
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