Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_1017 |
Symbol | |
ID | 5868777 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 1159478 |
End bp | 1160821 |
Gene Length | 1344 bp |
Protein Length | 447 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641546118 |
Product | carbohydrate-selective porin OprB |
Protein accession | YP_001667263 |
Protein GI | 167032032 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3659] Carbohydrate-selective porin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.134295 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAACAGC GCAAACGCAT CAGCACATTG GGCTCGCTGG CCTTGCTCGC CGTTGTCGGC AGCGGCGGCG TGCAGGCTGC CGAGGCTTTT TCCAGTGAGT CGAAATGGAT GACTGGCGAC TGGGGCGGCA CCCGTACCGA GCTGCTGGAA AAGGGCTACG ACTTCACCCT CGACTATGTC GGCGAGGTAG CCGGCAACCT GCACGGCGGC TACAACGACG ACAAGACCGC CCGCTACAGC GACCAGTTCG CCCTCGGCGC GCACCTGGAC TTGCAGAAAA TACTTGGCTG GCACGATGCC GAGTTCAAGC TGGCGATCAC CGAGCGCAGC GGCCGCAACC TGTCCAATGA CCGCATCAGC GACCCACGCG CTGGGCAGTT CAGCTCGGTG CAGGAGGTGT GGGGTCGTGG TCAGACCTGG CGCTTGACGC AGATGTGGGT CAAGCAGAAG TACTTCGACG GCGCACTGGA CGTCAAATTC GGCCGCTTCG GCGAGGGCGA GGACTTCAAC AGCTTCCCTT GCGATTTCCA GAACCTGGCC TTCTGTGGCT CGCAGGTGGG CAACTGGGTC GGCGGCATCT GGTACAACTG GCCGGTCAGC CAGTGGGCGC TGCGGGTGAA ATACAACATC ACCCCGGAAT TCTTCGTGCA GGTCGGCGCT TTCGAGCAGA ACCCTTCCAA CCTGGAAACC GGCAACGGCT TCAAGCTCAG CGGCAGTGGT ACCAAGGGGG CGATCTTGCC GGTGGAAGCG GTGTGGTCAC CCAAGGTCAA CGGCCTGCCT GGTGAGTACC GCCTGGGCTA CTACTACAGC ACGGCCAAGG CCGACGATGT GTTTGACGAC GTCAACGGCA ACCCGCAGGC GCTCAGCGGC GAGGCCTTCA AGTCGCATTC CAGCAAGCAC GGCTGGTGGG TGGTGGCGCA GCAGCAAGTC ACCGCTCACG GTGGCGACGT CAACCGTGGC CTGAGCCTGT TCGCCAACTT CACCGTGCAC GACAAGGCCA CCAACGTGGT CGACAACTAC CAGCAGGTGG GGCTGGTCTA CAAAGGCGCC TTCGACGCCC GGCCCAAGGA TGACATCGGC TTTGGCGTGG CGCGTATTCA TGTAAATGAC GACGTGAAAA AGCGCGCTGA ACTGCTGAAC GCCCAGAGTG GCATCAACGA TTACGACAAC CCAGGCTTCG TGCCGCTGCA GCGCACCGAG TACAACGCCG AGCTCTATTA CGGCTTCCAC GTCACCAACT GGCTCACCGT GCGGCCCAAC CTGCAGTACA TCAAAAGCCC CGGCGGGGTA GACCAGGTGG ACAACGCGCT GGTCGCAGGT TTGAAGATTC AGTCGTCATT CTGA
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Protein sequence | MEQRKRISTL GSLALLAVVG SGGVQAAEAF SSESKWMTGD WGGTRTELLE KGYDFTLDYV GEVAGNLHGG YNDDKTARYS DQFALGAHLD LQKILGWHDA EFKLAITERS GRNLSNDRIS DPRAGQFSSV QEVWGRGQTW RLTQMWVKQK YFDGALDVKF GRFGEGEDFN SFPCDFQNLA FCGSQVGNWV GGIWYNWPVS QWALRVKYNI TPEFFVQVGA FEQNPSNLET GNGFKLSGSG TKGAILPVEA VWSPKVNGLP GEYRLGYYYS TAKADDVFDD VNGNPQALSG EAFKSHSSKH GWWVVAQQQV TAHGGDVNRG LSLFANFTVH DKATNVVDNY QQVGLVYKGA FDARPKDDIG FGVARIHVND DVKKRAELLN AQSGINDYDN PGFVPLQRTE YNAELYYGFH VTNWLTVRPN LQYIKSPGGV DQVDNALVAG LKIQSSF
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