| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1015 |
|---|
| Symbol | |
|---|
| ID | 5868775 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 1157433 |
|---|
| End bp | 1158278 |
|---|
| Gene Length | 846 bp |
|---|
| Protein Length | 281 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641546116 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001667261 |
|---|
| Protein GI | 167032030 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0395] ABC-type sugar transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATAGCC CTGTCGACAA ACCAGCGCTC AGCCTGAGCC GCATTGCCAT ACACGCGGTG
TTGCTGATCG CTGTGGTGCT GTACCTGGTG CCGCTGGTGG TGATGCTGCT GACCAGCTTC
AAGACCCCCG AAGACATCAG TACCGGCAAC CTGCTGAGTT GGCCCGCGGT GATTACCGGC
ATTGGCTGGG TCAAGGCCTG GGGCACGGTC AGCGGTTACT TCTGGAATTC GATCATGATC
ACCGTGCCAG CGGTGCTGAT CTCCACCATC ATCGGTGCGC TGAACGGCTA TGTGCTGTCG
ATGTGGCGTT TTCGTGGCTC GCAGCTGTTT TTCGGCCTGC TGCTGTTCGG CTGCTTCCTG
CCGTTCCAGA CCGTGCTGCT GCCAGCCTCG TTCACCCTCG GCAAGCTCGG CCTGGCCAGC
ACCACCAGCG GCCTGGTGTT GGTGCACGTG GTCTACGGCC TGGCCTTCAC CACGCTGTTC
TTTCGCAACT TCTACGTGAG CATTCCCGAT GCGCTGGTCA AGGCCGCGCG CTTGGACGGT
GCTGGGTTCT TCACCATCTT CCGCCGCATC ATCCTGCCCA TGTCGACGCC GATCATCATG
GTTTGCTTGA TCTGGCAGTT CACCCAGATC TGGAACGACT TCCTGTTCGG CGTGGTGTTC
TCCAGTGGCG ACTCGCAACC GATCACCGTG GCCCTGAACA ACCTGGTCAA CACCAGCACC
GGGGCCAAGG AATACAACGT GGACATGGCG GCAGCGATGA TCGCCGGCCT GCCAACCCTG
CTGGTCTACG TGGTGGCAGG CAAATATTTC GTGCGCGGGC TGACAGCCGG CGCGGTCAAG
GGGTAA
|
|---|
| Protein sequence | MHSPVDKPAL SLSRIAIHAV LLIAVVLYLV PLVVMLLTSF KTPEDISTGN LLSWPAVITG
IGWVKAWGTV SGYFWNSIMI TVPAVLISTI IGALNGYVLS MWRFRGSQLF FGLLLFGCFL
PFQTVLLPAS FTLGKLGLAS TTSGLVLVHV VYGLAFTTLF FRNFYVSIPD ALVKAARLDG
AGFFTIFRRI ILPMSTPIIM VCLIWQFTQI WNDFLFGVVF SSGDSQPITV ALNNLVNTST
GAKEYNVDMA AAMIAGLPTL LVYVVAGKYF VRGLTAGAVK G
|
|---|
| |