Gene PputGB1_0963 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_0963 
Symbol 
ID5868723 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp1100826 
End bp1101350 
Gene Length525 bp 
Protein Length174 aa 
Translation table11 
GC content63% 
IMG OID641546064 
Product3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 
Protein accessionYP_001667209 
Protein GI167031978 
COG category[R] General function prediction only 
COG ID[COG1778] Low specificity phosphatase (HAD superfamily) 
TIGRFAM ID[TIGR01662] HAD-superfamily hydrolase, subfamily IIIA
[TIGR01670] 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCAGG ACCTCATGCA ACGCGGCAAG AGCATCAAGC TCGCGGTATT CGACGTGGAC 
GGCGTGCTCA CCGACGGGCG CCTGTACTTC CTCGAGGACG GCAGCGAATT CAAGACCTTC
AACACGCTCG ATGGCCAGGG CATCAAAATG CTCATGGCCT CGGGGGTGAC CACCGCCATC
ATCAGCGGGC GCAAGACCCC GGTGGTCGAG CGTCGCGCCA AGAACCTCGG TATCCCGCAC
CTGTATCAGG GGCGCGAGGA TAAATTGGTG GTGCTTGACG GCCTGCTCGC CGAACTGGGC
CTAAGCTATG ATCAAGTGGC CTACCTGGGG GATGACCTGC CCGACCTGCC GGTGATTCGC
CGGGTGGCAC TGGGCATGGC TGTAGCCAAC GCCGCACCGT TCGTACGCCA GCACGCTCAT
GGCGTGACCC AGGCACGCGG TGGCGAAGGC GCGGCCCGTG AATTCTGCGA ACTGATCATG
CAGGCCCAGG GCACCCTGGA CGCTGCCAAC GCCAACTACC TGTAA
 
Protein sequence
MNQDLMQRGK SIKLAVFDVD GVLTDGRLYF LEDGSEFKTF NTLDGQGIKM LMASGVTTAI 
ISGRKTPVVE RRAKNLGIPH LYQGREDKLV VLDGLLAELG LSYDQVAYLG DDLPDLPVIR
RVALGMAVAN AAPFVRQHAH GVTQARGGEG AAREFCELIM QAQGTLDAAN ANYL