| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0961 |
|---|
| Symbol | |
|---|
| ID | 5868721 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 1099734 |
|---|
| End bp | 1100258 |
|---|
| Gene Length | 525 bp |
|---|
| Protein Length | 174 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641546062 |
|---|
| Product | lipopolysaccharide transport periplasmic protein LptA |
|---|
| Protein accession | YP_001667207 |
|---|
| Protein GI | 167031976 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1934] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03002] lipopolysaccharide transport periplasmic protein LptA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGCTCG TTAAAACCCT CCCCCTTTTG CTCAGCCTGA GCGCAGCACT GGGAAGCGCG
AGCGCCCTCG CCCTGCCGAA TGACCGTGAC CAGCCTATCC GCATCCAGGC CGATAACGCC
CACCTGGATG ACAAGCAAGG CGTGGCCACC TACACCGGCG ACGTGATCAT CACCCAGGGT
TCGATGATGA TCAAAGGCAA CACCGTGACC ATCACCCGTT CCGCCTCCGG CGATATCGAC
GTGGTGACCT CGGTGGGCAA CCTGGCCTAC TTCGAGCAGC AGCAGAGCGC AGCCAAGCCG
GACAAGATGA AGGGCTGGGG CGTGACCATC CAGTACCAGT CGCAGAAGGA CCTGGTGATC
CTCACCGACC GCGCCAAGGT CGAGAACGAA GGCAACACCA CCGAAGGCGA GAAGATCGTC
TACAACACCC AGACCCAGGT GGCGACCGCC GGTCGCGGTG GCAACGTGAC TACACCGCGT
CAGCGTATCG ACATGGTGAT CCAGCCCAAG AAGAAGGCCG AGTAA
|
|---|
| Protein sequence | MRLVKTLPLL LSLSAALGSA SALALPNDRD QPIRIQADNA HLDDKQGVAT YTGDVIITQG
SMMIKGNTVT ITRSASGDID VVTSVGNLAY FEQQQSAAKP DKMKGWGVTI QYQSQKDLVI
LTDRAKVENE GNTTEGEKIV YNTQTQVATA GRGGNVTTPR QRIDMVIQPK KKAE
|
|---|
| |