Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0959 |
Symbol | |
ID | 5868719 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 1097339 |
End bp | 1098808 |
Gene Length | 1470 bp |
Protein Length | 489 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641546060 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_001667205 |
Protein GI | 167031974 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.742347 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 51 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGCCAGC AACTGACGAT GACACCGCAG TTGCAACAGG CCATCCGTCT GCTCCAGCTT TCCACCCTGG ACCTCCAACA GGAAATCCAG GAAGCGCTGG AGTCGAACCC GATGCTCGAA CGTCAGGAAG ACGGCGACGA CTTCGACAAC AGCGACCCGA TGGCGGACAA CGCCGAAAAC AAGCCGGCCG CCGAAGCCCA GGACAATAGC TTCCAGGAAA GCACTGTCAG TGCCGACAGC CTGGAAGACG GTGAGTGGAG CGAGCGCATC CCCAACGAGC TTCCGGTCGA TACCGCCTGG GAAGACATCT ACCAGACCAG CGCCAGCAGC CTGCCGAGCA ACGATGACGA CGAGTGGGAC TTCACCACCC GCACATCGGC CGGCGAGAGC CTGCAAAGCC ACCTGCTGTG GCAGCTGAAC CTGGCGCCGA TGTCCGATAC CGACCGCCTG ATCGCCGTAA CCCTGATCGA CAGCATCAAC GGCCAGGGGT ATCTGGAAGA CACCCTCGAG GAAATCTGCG CAGGTTTCGA CCCTGAGCTG GATATCGAGC TGGACGAAGT CGAAGCGGTA CTGCACCGCA TCCAGCAGTT CGAGCCAGCT GGCGTGGGCG CACGTAACCT GGGCGAATGC CTGCTGCTGC AACTGCGCCA GCTGCCCGCC AGCACCCCGT GGATGACCGA AGCCAAGCGC CTGGTCACCG ATTTCATCGA CCTGCTCGGC AGCCGCGACT ACAGCCAGTT GATGCGGCGC ATGAAAATCA AGGAAGACGA GCTGCGCCAG GTCATCGAGC TGGTGCAAAG CCTCAACCCG CGCCCCGGTT CGCAGATCGA ATCCAGCGAG CCCGAGTACG TAGTGCCTGA CGTCATCGTG CGCAAGGACA GCGAGCGCTG GCTGGTGGAG CTGAACCAGG AAGCCATCCC ACGCCTGCGC GTCAACCCAC AGTACGCGGG CTTCGTACGC CGTGCCGACA CCAGCGCCGA CAACACCTTC ATGCGCAATC AGCTGCAAGA AGCGCGCTGG TTCATCAAGA GCCTGCAAAG CCGCAATGAA ACACTGATGA AGGTTGCCAC GCAGATCGTC GAGCACCAGC GCGGCTTCCT CGACCACGGC GATGAAGCAA TGAAGCCGTT GGTGTTGCAC GACATCGCCG AAGCGGTGGG CATGCACGAG TCGACCATTT CGCGGGTTAC CACGCAAAAG TACATGCACA CACCGCGTGG CATCTACGAA CTGAAATACT TTTTCTCCAG CCACGTCAGC ACCTCCGAAG GCGGAGAATG CTCGTCCACG GCGATCCGCG CGATCATCAA AAAACTGGTT GCAGCGGAAA ATCAGAAAAA GCCATTGAGT GACAGCAAGA TCGCTGGTTT ACTGGAGGCA CAAGGCATCC AGGTAGCCCG TCGCACCGTC GCCAAGTACC GCGAGTCCCT CGGCATCGCA CCGTCGAGCG AGCGCAAGCG ACTGATGTAG
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Protein sequence | MGQQLTMTPQ LQQAIRLLQL STLDLQQEIQ EALESNPMLE RQEDGDDFDN SDPMADNAEN KPAAEAQDNS FQESTVSADS LEDGEWSERI PNELPVDTAW EDIYQTSASS LPSNDDDEWD FTTRTSAGES LQSHLLWQLN LAPMSDTDRL IAVTLIDSIN GQGYLEDTLE EICAGFDPEL DIELDEVEAV LHRIQQFEPA GVGARNLGEC LLLQLRQLPA STPWMTEAKR LVTDFIDLLG SRDYSQLMRR MKIKEDELRQ VIELVQSLNP RPGSQIESSE PEYVVPDVIV RKDSERWLVE LNQEAIPRLR VNPQYAGFVR RADTSADNTF MRNQLQEARW FIKSLQSRNE TLMKVATQIV EHQRGFLDHG DEAMKPLVLH DIAEAVGMHE STISRVTTQK YMHTPRGIYE LKYFFSSHVS TSEGGECSST AIRAIIKKLV AAENQKKPLS DSKIAGLLEA QGIQVARRTV AKYRESLGIA PSSERKRLM
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