Gene PputGB1_0959 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_0959 
Symbol 
ID5868719 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp1097339 
End bp1098808 
Gene Length1470 bp 
Protein Length489 aa 
Translation table11 
GC content61% 
IMG OID641546060 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_001667205 
Protein GI167031974 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.742347 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones51 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCCAGC AACTGACGAT GACACCGCAG TTGCAACAGG CCATCCGTCT GCTCCAGCTT 
TCCACCCTGG ACCTCCAACA GGAAATCCAG GAAGCGCTGG AGTCGAACCC GATGCTCGAA
CGTCAGGAAG ACGGCGACGA CTTCGACAAC AGCGACCCGA TGGCGGACAA CGCCGAAAAC
AAGCCGGCCG CCGAAGCCCA GGACAATAGC TTCCAGGAAA GCACTGTCAG TGCCGACAGC
CTGGAAGACG GTGAGTGGAG CGAGCGCATC CCCAACGAGC TTCCGGTCGA TACCGCCTGG
GAAGACATCT ACCAGACCAG CGCCAGCAGC CTGCCGAGCA ACGATGACGA CGAGTGGGAC
TTCACCACCC GCACATCGGC CGGCGAGAGC CTGCAAAGCC ACCTGCTGTG GCAGCTGAAC
CTGGCGCCGA TGTCCGATAC CGACCGCCTG ATCGCCGTAA CCCTGATCGA CAGCATCAAC
GGCCAGGGGT ATCTGGAAGA CACCCTCGAG GAAATCTGCG CAGGTTTCGA CCCTGAGCTG
GATATCGAGC TGGACGAAGT CGAAGCGGTA CTGCACCGCA TCCAGCAGTT CGAGCCAGCT
GGCGTGGGCG CACGTAACCT GGGCGAATGC CTGCTGCTGC AACTGCGCCA GCTGCCCGCC
AGCACCCCGT GGATGACCGA AGCCAAGCGC CTGGTCACCG ATTTCATCGA CCTGCTCGGC
AGCCGCGACT ACAGCCAGTT GATGCGGCGC ATGAAAATCA AGGAAGACGA GCTGCGCCAG
GTCATCGAGC TGGTGCAAAG CCTCAACCCG CGCCCCGGTT CGCAGATCGA ATCCAGCGAG
CCCGAGTACG TAGTGCCTGA CGTCATCGTG CGCAAGGACA GCGAGCGCTG GCTGGTGGAG
CTGAACCAGG AAGCCATCCC ACGCCTGCGC GTCAACCCAC AGTACGCGGG CTTCGTACGC
CGTGCCGACA CCAGCGCCGA CAACACCTTC ATGCGCAATC AGCTGCAAGA AGCGCGCTGG
TTCATCAAGA GCCTGCAAAG CCGCAATGAA ACACTGATGA AGGTTGCCAC GCAGATCGTC
GAGCACCAGC GCGGCTTCCT CGACCACGGC GATGAAGCAA TGAAGCCGTT GGTGTTGCAC
GACATCGCCG AAGCGGTGGG CATGCACGAG TCGACCATTT CGCGGGTTAC CACGCAAAAG
TACATGCACA CACCGCGTGG CATCTACGAA CTGAAATACT TTTTCTCCAG CCACGTCAGC
ACCTCCGAAG GCGGAGAATG CTCGTCCACG GCGATCCGCG CGATCATCAA AAAACTGGTT
GCAGCGGAAA ATCAGAAAAA GCCATTGAGT GACAGCAAGA TCGCTGGTTT ACTGGAGGCA
CAAGGCATCC AGGTAGCCCG TCGCACCGTC GCCAAGTACC GCGAGTCCCT CGGCATCGCA
CCGTCGAGCG AGCGCAAGCG ACTGATGTAG
 
Protein sequence
MGQQLTMTPQ LQQAIRLLQL STLDLQQEIQ EALESNPMLE RQEDGDDFDN SDPMADNAEN 
KPAAEAQDNS FQESTVSADS LEDGEWSERI PNELPVDTAW EDIYQTSASS LPSNDDDEWD
FTTRTSAGES LQSHLLWQLN LAPMSDTDRL IAVTLIDSIN GQGYLEDTLE EICAGFDPEL
DIELDEVEAV LHRIQQFEPA GVGARNLGEC LLLQLRQLPA STPWMTEAKR LVTDFIDLLG
SRDYSQLMRR MKIKEDELRQ VIELVQSLNP RPGSQIESSE PEYVVPDVIV RKDSERWLVE
LNQEAIPRLR VNPQYAGFVR RADTSADNTF MRNQLQEARW FIKSLQSRNE TLMKVATQIV
EHQRGFLDHG DEAMKPLVLH DIAEAVGMHE STISRVTTQK YMHTPRGIYE LKYFFSSHVS
TSEGGECSST AIRAIIKKLV AAENQKKPLS DSKIAGLLEA QGIQVARRTV AKYRESLGIA
PSSERKRLM