Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0933 |
Symbol | |
ID | 5868693 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 1071396 |
End bp | 1072754 |
Gene Length | 1359 bp |
Protein Length | 452 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641546034 |
Product | amino acid permease-associated region |
Protein accession | YP_001667179 |
Protein GI | 167031948 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 40 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAGACC AGAGCACGCC CGAGCGGTTA CAGCGCGGGC TGAAGAATCG CCATATCCAG CTGATCGCGC TGGGCGGGGC CATCGGTACC GGGTTGTTTC TGGGCATCGC CCAGACCATC CAGCTGGCCG GCCCCTCCGT GCTGCTGGGC TATGCCATCG CCGGTCTGAT GGCCTTTCTG ATCATGCGCC AGTTGGGCGA AATGGTCGTG GAAGAGCCGG TCGCCGGTAG TTTCAGCCAC TTCGCCCACC AGTACTGGAG CGAGTTCGCC GGCTTCGTTT CGGGGTGGAA TTACTGGGTG GTGTACGTGC TGGTCGGCAT GGCCGAACTG ACGGCGGTCG GCATCTACGT GCAGTACTGG TGGCCGGAGT TTCCTACCTG GGCCACCGCG GCGATCTTCT TCGTGGCGAT CAACCTGATC AACCTGACGC AGGTGAAGGT CTACGGCGAG ATGGAGTTCT GGTTCGCCCT GGTCAAGGTG GTGGCCATCG TCAGCATGAT CGGCTTTGGC GCCTGGCTGT TGAGCAGCGG CCATGGCGGC CCGGATGCCA GCGTGGCCAA CCTGTGGCAG TACGGCGGCT TCTTCCCTAA CGGCGTCAGC GGCTTGGTGA TGGCCTTGGC GGTGATCATG TTCTCGTTCG GCGGCCTGGA GCTGGTGGGT ATCACCGCCG CCGAAGCCGA CAACCCCCGC CAGAGCATCC CCAAAGCCAC CAACCAAGTG GTGTACCGCA TCCTGATCTT CTACATCGGT GCCTTGGCGG TGCTGTTGTC GCTGTACCCG TGGCAGAAGG TAGTGCAGGG CGGTAGCCCG TTCGTGATGA TCTTCCATGA GCTGGACAGC GACCTGGTGG CGACCATCCT CAATATCGTG GTGCTGACGG CTGCGCTGTC GGTGTACAAC AGCTGTGTGT ACGCCAACAG CCGCATGCTG TTCGGCCTGG CTAGCCAAGG TGATGCGCCG CGCCAGCTGC TGAAGGTAAG CCGCAGCGGT GTACCGCTGA CCGCGCTGGG CGTGTCGGCC TTCGCGACCG GCCTGTGCGT GCTGATCAAC TACCTGATGC CGGGCGAGGC CTTTGGCTTG CTGATGGCGC TGGCGGTGTC GGCGCTGGTG ATCAACTGGG CGAGCATCAG CATTACTCAC CTGAAATTCC GCAAGGCCAA GCTGGCTGCC GGCATCATCC CCTTCTACAA AAGCCTGGGG CACCCGCTGA CCAACTACCT GTGTCTGGCG TTCATCGTGC TGATATTGGT GGTGATGTAC CTGACCCCGC CGATTCGCAT CTCGGTGATG CTGATCCCGG CTTGGATTGC CGTACTGTGG GTGGCCTTCA AGCTGAAGAA GGCTCGCCAG GCCAAATAG
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Protein sequence | MQDQSTPERL QRGLKNRHIQ LIALGGAIGT GLFLGIAQTI QLAGPSVLLG YAIAGLMAFL IMRQLGEMVV EEPVAGSFSH FAHQYWSEFA GFVSGWNYWV VYVLVGMAEL TAVGIYVQYW WPEFPTWATA AIFFVAINLI NLTQVKVYGE MEFWFALVKV VAIVSMIGFG AWLLSSGHGG PDASVANLWQ YGGFFPNGVS GLVMALAVIM FSFGGLELVG ITAAEADNPR QSIPKATNQV VYRILIFYIG ALAVLLSLYP WQKVVQGGSP FVMIFHELDS DLVATILNIV VLTAALSVYN SCVYANSRML FGLASQGDAP RQLLKVSRSG VPLTALGVSA FATGLCVLIN YLMPGEAFGL LMALAVSALV INWASISITH LKFRKAKLAA GIIPFYKSLG HPLTNYLCLA FIVLILVVMY LTPPIRISVM LIPAWIAVLW VAFKLKKARQ AK
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