| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0916 |
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| Symbol | prfC |
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| ID | 5868676 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 1050839 |
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| End bp | 1052422 |
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| Gene Length | 1584 bp |
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| Protein Length | 527 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641546017 |
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| Product | peptide chain release factor 3 |
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| Protein accession | YP_001667162 |
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| Protein GI | 167031931 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG4108] Peptide chain release factor RF-3 |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.0920838 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.271742 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAACC AGGCCGCCGA AGTCGCGAAG CGCCGCACTT TCGCAATTAT TTCCCACCCC
GACGCTGGTA AGACCACCAT CACCGAGAAG CTGTTGCTGA TGGGCAAGGC CATTGCCGTC
GCCGGTACCG TGAAGTCGCG CAAGTCCGAC CGCCACGCCA CCTCCGACTG GATGGAAATG
GAGAAGCAGC GCGGCATCTC CATCACCACC TCGGTGATGC AGTTCCCGTA CCGCGAGCAC
ATGATCAACC TGCTCGACAC CCCCGGCCAC GAAGACTTCT CGGAAGACAC CTACCGCACC
CTGACCGCGG TGGACTCGGC GCTGATGGTG CTCGACGGCG GTAAAGGTGT AGAGCCGCGT
ACCATCGCCC TGATGGACGT GTGCCGCCTG CGCGACACGC CAATCGTCAG CTTCATCAAC
AAACTCGACC GAGACATTCG CGACCCGATC GAGCTGCTCG ACGAGATCGA AGCCGTTCTG
AAGATCAAGG CCGCGCCAAT TACCTGGCCG ATCGGTTGCT ACCGCGATTT CAAGGGCGTG
TATCACCTGA CCGGTGACTA CATCGTGGTG TACACCCCAG GCCACGGCCA CGAGCGCACC
GAAGCCAAGA TCATCCAGAA CCTGGACTCG GACGAAGCCC GCGCCCACCT GGGCGACCAG
TACGACTCGT TCGTCGAGCA ACTGGAGCTG GTGCAGGGCG CCTGCCACGA GTTCAACCAG
GACGAGTTCA TCAACGGCCA GCTCACCCCG GTGTTCTTCG GTACCGCATT GGGCAACTTC
GGTGTCGACC ACGTGCTCGA CGCGGTAGTC GACTGGGCGC CGCGCCCGCT GGGCCGTGTT
GCCCACGAGC GTACCGTGGA GCCTGTGGAA GAGAAGTTCA CCGGTTTCGT GTTCAAGATC
CAGGCAAACA TGGACCCGAA ACACCGCGAC CGTATCGCCT TCATGCGTAT CTGCTCGGGC
AAGTACGAGA AGGGCATGAA AATGCGCCAC GTTCGCCTGA ACAAGGACCT GCGTATCGGC
GATGCGCTGA CCTTCTTCTC CTCCGAGCGC GAGCAGTTGG AAGAGGCCTT TGCCGGTGAC
ATCATCGGCC TGCACAACCA CGGCACCATC CAGATCGGCG ACACCTTCAC CGAAGGCGAG
GCGCTGGGCT TCACCGGTAT CCCGCACTTC GCTCCGGAGC TGTTCCGCCG CGTTCGCCTG
AAGGACCCGC TGAAATCCAA GCAACTGCGT CAGGGCCTGC AGCAGTTGGC CGAAGAGGGT
GCGACCCAGG TGTTCTTCCC GGAGCGCAGC AACGACATCA TCCTCGGTGC GGTGGGTGTG
CTGCAGTTCG ACGTGGTCGC CAGCCGCCTG AAGGAAGAAT ACAAGGTCGA GTGCGCCTAC
GAGCCGATCA CCGTATGGTC GGCGCGCTGG ATCAGCTGCG ATGACAAGAA GAAGCTCGAG
GAATTCCAGA CCAAGGCCAT GGAAAACCTG GCCATCGACG GTGGCGGGCA CCTGACCTAC
CTGGCGCCGA CCCGGGTCAA CCTGGCGCTG ATGGAAGAGC GCTGGCCGGA CATCAAGTTC
CGCGCTACCC GCGAGCATCA TTGA
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| Protein sequence | MTNQAAEVAK RRTFAIISHP DAGKTTITEK LLLMGKAIAV AGTVKSRKSD RHATSDWMEM
EKQRGISITT SVMQFPYREH MINLLDTPGH EDFSEDTYRT LTAVDSALMV LDGGKGVEPR
TIALMDVCRL RDTPIVSFIN KLDRDIRDPI ELLDEIEAVL KIKAAPITWP IGCYRDFKGV
YHLTGDYIVV YTPGHGHERT EAKIIQNLDS DEARAHLGDQ YDSFVEQLEL VQGACHEFNQ
DEFINGQLTP VFFGTALGNF GVDHVLDAVV DWAPRPLGRV AHERTVEPVE EKFTGFVFKI
QANMDPKHRD RIAFMRICSG KYEKGMKMRH VRLNKDLRIG DALTFFSSER EQLEEAFAGD
IIGLHNHGTI QIGDTFTEGE ALGFTGIPHF APELFRRVRL KDPLKSKQLR QGLQQLAEEG
ATQVFFPERS NDIILGAVGV LQFDVVASRL KEEYKVECAY EPITVWSARW ISCDDKKKLE
EFQTKAMENL AIDGGGHLTY LAPTRVNLAL MEERWPDIKF RATREHH
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