| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0912 |
|---|
| Symbol | |
|---|
| ID | 5868672 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 1046833 |
|---|
| End bp | 1047990 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641546013 |
|---|
| Product | glycine betaine/L-proline ABC transporter, ATPase subunit |
|---|
| Protein accession | YP_001667158 |
|---|
| Protein GI | 167031927 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1125] ABC-type proline/glycine betaine transport systems, ATPase components |
|---|
| TIGRFAM ID | [TIGR01186] glycine betaine/L-proline transport ATP binding subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.195496 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGAAC TGAAGAACCT CAGCAAAACC TTCAACGTCA ACGGCAAGGA CGTCAAAGCC
GTCGACTCGG TAAGCCTTAC GGTCAACGAA GGGGAAATCT GCGTGTTCCT CGGCCCTTCG
GGCTGCGGCA AGAGCACCAC GCTGAAAATG ATCAACCGCC TGATCACACC GACCTCCGGA
CAAGTGTTCA TCAATGGCGA AGACACCACC GGGCTGGACG AAGTGACCTT GCGCCGGCAC
ATCGGTTACG TGATCCAGCA GATCGGTTTG TTCCCCAACA TGACCATCGA AGAGAACATC
ACCGTAGTGC CGCGCCTGCT TGGCTGGGAC AAGCAAAAGT GCCATGAACG CGCCCGCGAG
CTGATGCACA TGATCAAGCT CGAACCTAAA CAGTACCTGC AGCGCTACCC ACGCGAACTT
TCCGGTGGCC AGCAGCAGCG CATTGGCGTG ATCCGCGCGC TGGCTGCCGA AGCACCGGTA
CTGTTGATGG ACGAGCCGTT CGGCGCGGTC GACCCGATCA ACCGCGAAAT GATCCAGAAC
GAGTTCTTCG AAATGCAGCG GGCGCTGAAC AAGACGGTGA TCATGGTCAG CCACGACATC
GACGAAGCGA TCAAGCTGGG CGACAAGATT GCCATCTTCC GTGCCGGCAA GCTGTTGCAG
CTGGACCACC CGGACACCCT GCTGGCCCAC CCGGCCGATG AGTTCGTCAG CAACTTCGTT
GGCCAGGACA GCACCCTCAA GCGCCTGCTG CTGGTGCGTG CCGAGGATGC CGCAGACAAC
GCGCCGTCGG TAAGCCCGGA AACGCCTGTA AACGATGCAC TGGAACTGCT TGATGAACAC
GACCGCCGCT ATGTGGTGGT GACCGATGCG CAGAACAAGG CGCTGGGCTA TGTGCGCCGG
CGCGACATGC ACCGCCAGCA AGGCACCTGT GGCGACTTCC TACGGCCGTT CAATGCCACG
GCATCGCACG ATGAACATTT GCGCATCCTG CTGTCGCGCA TGTACGAGTT CAACCGGGCG
TGGTTGCCAG TGCTGGATGC CGAACAGGTG TTTTTGGGCG AGGTGACGCA GGAGTCGATT
GCGGCCTACC TGAGTTCAGG AAGGTCGCGC GGGGCGAAGA CTTCGATCGT GTCGCCGGCT
GAAGCAGTAA TTTCCTGA
|
|---|
| Protein sequence | MIELKNLSKT FNVNGKDVKA VDSVSLTVNE GEICVFLGPS GCGKSTTLKM INRLITPTSG
QVFINGEDTT GLDEVTLRRH IGYVIQQIGL FPNMTIEENI TVVPRLLGWD KQKCHERARE
LMHMIKLEPK QYLQRYPREL SGGQQQRIGV IRALAAEAPV LLMDEPFGAV DPINREMIQN
EFFEMQRALN KTVIMVSHDI DEAIKLGDKI AIFRAGKLLQ LDHPDTLLAH PADEFVSNFV
GQDSTLKRLL LVRAEDAADN APSVSPETPV NDALELLDEH DRRYVVVTDA QNKALGYVRR
RDMHRQQGTC GDFLRPFNAT ASHDEHLRIL LSRMYEFNRA WLPVLDAEQV FLGEVTQESI
AAYLSSGRSR GAKTSIVSPA EAVIS
|
|---|
| |