| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0894 |
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| Symbol | |
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| ID | 5868654 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 1023999 |
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| End bp | 1024760 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641545995 |
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| Product | type IV pilus biogenesis/stability protein PilW |
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| Protein accession | YP_001667140 |
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| Protein GI | 167031909 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.000000416211 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCCTGC GCACCGCGCT GTCGATCCTT GCGCTTTCGC TGCTGGCCGG CTGCGTGTCG
GGTGGCGTGG GCGACCCCCT GGCCAGTCGC CAGGGGAGGG TGGAAGCGGG GCGAGCTTAT
GTGCAGCTTG GCCTGGGTTA TTTGCAACAG GGTTTGACCG AGCAGGCCAA GGCACCACTG
GGCAAGGCCT TGGCGCTGGA TGGGCGGGAT GCCGACGCGC ACGCTGCCCT GGCGCTGGTG
TTTCAGGCCG AAGGCGAACC GGCGCTGGCC GAAACGCACT TTCGCAAGGC CCTGCAGATC
AGCAGCGGCG ACACACGAAT TAGCAACAAT TACGGCAGTT TCCTTTATGC TCAGGGGCGA
TTTGCCGAGG CCGAGCAGAT GTTTCGCCTG GCCAGTGCCG ATACCCTGTA TCCTGAGCGC
TCACGGGTGT ACGAGAACCT GGGCCTGACC GCCCTCAAGC TCGAGCGCCG CGACCAGGCG
CATGCCTATC TGTTGAAAGC GTTGCAACTC AACCAGCGGC AACCGAAAGC GTTGCTGGAA
ATGGCTGAGT TGTCCTACGA AAACAGGCAT TATGTGCCGG CCCGGGACTA CTACGATCGT
TTCAGCCAGT TGAGCGACCA CGACGCCCGT AGCCTGCTGC TGGGCAGCCG CCTTGCCAGG
GTGTTCGACG AGCAGGGCGC ACTGGCCGAA CTGGGCCAGC AATTACAACG ACTTTATCCC
GGTACGCCGG AATACCAGCA ATACCTGTCG GAGCAACGAT GA
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| Protein sequence | MSLRTALSIL ALSLLAGCVS GGVGDPLASR QGRVEAGRAY VQLGLGYLQQ GLTEQAKAPL
GKALALDGRD ADAHAALALV FQAEGEPALA ETHFRKALQI SSGDTRISNN YGSFLYAQGR
FAEAEQMFRL ASADTLYPER SRVYENLGLT ALKLERRDQA HAYLLKALQL NQRQPKALLE
MAELSYENRH YVPARDYYDR FSQLSDHDAR SLLLGSRLAR VFDEQGALAE LGQQLQRLYP
GTPEYQQYLS EQR
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