Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0886 |
Symbol | |
ID | 5868646 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 1018570 |
End bp | 1018956 |
Gene Length | 387 bp |
Protein Length | 128 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 641545987 |
Product | scaffold protein |
Protein accession | YP_001667132 |
Protein GI | 167031901 |
COG category | [C] Energy production and conversion |
COG ID | [COG0822] NifU homolog involved in Fe-S cluster formation |
TIGRFAM ID | [TIGR01999] FeS cluster assembly scaffold IscU |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 0.272267 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.000151152 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCATACA GTGAAAAGGT CATCGACCAC TACGAAAACC CACGCAACGT CGGCAAGATG AATGCCGAGG ACCCGGATGT CGGTACCGGC ATGGTCGGCG CTCCAGCGTG CGGTGACGTG ATGCGTCTGC AGATCAAGGT CAACGAGCAA GGCGTTATCG AAGACGCCAA GTTCAAGACC TACGGCTGCG GTTCGGCCAT CGCTTCCAGC TCCCTCGCCA CCGAGTGGAT GAAGGGCAAG ACCCTGGACG AAGCCGAAAC CATCAAGAAC ACCCAGCTGG CCGAAGAACT GGCGTTGCCG CCGGTCAAGA TCCACTGCTC GGTACTCGCC GAGGATGCCA TCAAGGCAGC CGTGCGCGAT TACAAGCAGA AGAAAGGCTT GATCTAA
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Protein sequence | MAYSEKVIDH YENPRNVGKM NAEDPDVGTG MVGAPACGDV MRLQIKVNEQ GVIEDAKFKT YGCGSAIASS SLATEWMKGK TLDEAETIKN TQLAEELALP PVKIHCSVLA EDAIKAAVRD YKQKKGLI
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