| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0885 |
|---|
| Symbol | |
|---|
| ID | 5868645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 1017309 |
|---|
| End bp | 1018523 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641545986 |
|---|
| Product | cysteine desulfurase |
|---|
| Protein accession | YP_001667131 |
|---|
| Protein GI | 167031900 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1104] Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes |
|---|
| TIGRFAM ID | [TIGR02006] cysteine desulfurase IscS
[TIGR03402] cysteine desulfurase NifS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.306655 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.00050858 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTGC CGATCTACCT TGATTACTCC GCGACCACCC CGGTCGACCC ACGCGTGGCC
CAGAAGATGG CCGACTGCCT GCTGGTTGAC GGGAACTTCG GTAACCCGGC TTCGCGTTCC
CACGTATTCG GCTGGAAAGC CGAAGAAGCG GTCGAGAACG GTCGCCGCCA GGTTGCCGAG
CTGATCAATG CCGATCCGCG CGAAATCGTC TGGACCAGCG GTGCTACCGA GTCCGACAAC
CTCGCACTCA AAGGCGTCGC GCACTTCTAT CAGACCAAGG GCAAGCACAT CATCACCTCC
AAGATCGAGC ACAAGGCGGT CCTGGATACC GCTCGCCAGC TGGAGCGTGA AGGTTTCGAA
GTCACCTACC TTGAGCCAGG CGAAGACGGC ATCGTCACCC CGGCCATGGT AGAGGCGGTG
CTGCGCGACG ACACCATCCT GGTCTCGCTG ATGCACGTGA ACAACGAAGT TGGCTCGATC
AACGACATCG CCGCCATCGG TGAGCTGACC CGCTCGCGCG GCGTACTGTT CCACGTCGAC
GCCGCCCAGT CGGCCGGCAA GGTCGAAATC GACCTGCAAA AGCTCAAGGT CGACCTGATG
TCGTTCTCGG CTCACAAGGT CTACGGCCCT AAAGGCATCG GTGCGCTGTA CGTCAGCCGC
AAGCCGCGTG TACGCCTGGA AGCCATCATT CACGGTGGCG GCCATGAGCG CGGCATGCGT
TCGGGCACCC TGCCAACCCA CCAGATCGTC GGCATGGGCG AAGCGTTCGC CATCGCCAAG
CAGGAAATGG TTGCGGAAAA CGCGCGCATC AAGGCCCTGA GCGACCGCTT CTTCAAGCAG
GTCTCGGACC TTGAAGAGCT GTACGTCAAC GGCAGCCAGA CTGCCCGTGT TCCGCACAAC
CTGAACCTGA GCTTCAACTA CGTCGAAGGT GAATCGCTGC TGATGTCGCT GAAGGACATC
GCCGTATCGT CCGGTTCGGC CTGCACCTCG GCATCGCTGG AGCCGTCGTA CGTACTGCGC
GCTCTGGGCC GCAACGACGA GCTGGCGCAC AGCTCGATCC GCTTCTCCTT CGGCCGTTTC
ACCACCGAAG AAGAAGTCGA CTACGCCGCG CAGAAAGTCT GCGAGGCCGT CAACAAACTG
CGTGAGCTGT CGCCGCTGTG GGACATGTAC AAAGACGGCG TTGACATCTC CAAGATCGAG
TGGGCCGCCC ACTAA
|
|---|
| Protein sequence | MKLPIYLDYS ATTPVDPRVA QKMADCLLVD GNFGNPASRS HVFGWKAEEA VENGRRQVAE
LINADPREIV WTSGATESDN LALKGVAHFY QTKGKHIITS KIEHKAVLDT ARQLEREGFE
VTYLEPGEDG IVTPAMVEAV LRDDTILVSL MHVNNEVGSI NDIAAIGELT RSRGVLFHVD
AAQSAGKVEI DLQKLKVDLM SFSAHKVYGP KGIGALYVSR KPRVRLEAII HGGGHERGMR
SGTLPTHQIV GMGEAFAIAK QEMVAENARI KALSDRFFKQ VSDLEELYVN GSQTARVPHN
LNLSFNYVEG ESLLMSLKDI AVSSGSACTS ASLEPSYVLR ALGRNDELAH SSIRFSFGRF
TTEEEVDYAA QKVCEAVNKL RELSPLWDMY KDGVDISKIE WAAH
|
|---|
| |