Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0878 |
Symbol | secD |
ID | 5868638 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 1010527 |
End bp | 1012389 |
Gene Length | 1863 bp |
Protein Length | 620 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641545979 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001667124 |
Protein GI | 167031893 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 0.16793 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGAACA AATACCCTCT GTGGAAATAT GCACTGATCG TGCTGGTACT GGTGGTCGGT TTCATTTATT CCGCTCCCAA CCTTTACCCG GATGACCCGG CAGTACAGAT CAGCGGTGCC AGCTCGGCGC TGCAGGTGAA CCAGGCCGAC CTCGATCGCG TCAGCAAGGC GCTGGTCGAT GCCAAAATCA CCGTCAAGGG CGCCAGCCTG GGTGAGAAGG GCAGCGGGCT GATCCGCCTG ACCAATCAGG AAGACCAACT GCCAGCCAAA GATGTCGTGC GCAAGGCACT GGGCGATGAT TACGTCGTGG CCCTCAACCT GGCTCAGACT ACCCCGCAAT GGCTGCGCAA CCTGGGTGCA AGCCCGATGA AGCTGGGCCT GGACCTGTCC GGTGGTGTGC ACTTCCTGCT GGAAGTGGAC ATGGACAAGG CCATGACTGC CCGCATGAAA GTCTACGAAG GCGAGGTCAA GACCTTGCTG CGCAAAGAGC GCATCCGCTA CCGCAGCCTG CCTCAGCAGG ATGGCGGCAT CATGCTGGGC TTCGCTGACG ATGCTACCCG CGAACAGGCA CGTGTCCTGA TCCGCAAGAA TTTCAATGAT TTCGACCTGA CCACCACCGA GCGCAACGAG CTTGCGGTGC TGCGTCTGGC GCTGACCCAG GCGAAAGTCG CCGAGATCCG CGAATACTCG ATCAAGCAGA ACCTTACCAC CGTGCGCAAC CGCGTGAACG AGCTGGGCGT GGCCGAGCCG CTGGTACAGC GCCAGGGCGC CAACCGCATC GTGGTCGAGC TGCCAGGCGT GCAGGACACT GCCGAAGCCA AGCGTATCCT CGGTAAAACC GCCAACCTGG AGTTCCGCTT CGGTGCCGAG CCGGGCGCTT CCAAGGCCAC TACCGAAGTG TTCGAGTTCC GTGAAGGCGG CCGTTCCGCC CCGGTCGAGC GCGGCCTGAT CATTACCGGT GACCAGGTTA CCGACGCCCA GGCCAGCTTT GACGAGCACG GCCGCCCGCA AGTGAACATC CGCCTGGATG GCCACGGTGG CGAGCTGATG AGCCGCGCTA CCCGCAGCAA CGTCGGTCGC AGCATGGCGG TGATCTTCAT CGAGCAGAAG CCGGTCACTC GCTATGTGAA GCAGACCGTC GACGGCGTCG AGAAGGACGT TGCCGTACAA AGCTTCGTGG AAGAGAAGAA AATCATCAGC CTGGCGACCA TCCAGTCGCC GCTGGGCAGC CAGTTCCGCA TCACCGGCCT GAACGGCCAG GGCGAATCGT CGGAGCTGGC CCTGCTGCTG CGTGCCGGTG GTCTGGCCGC GCCAATGTAC TTCGCTGAAG AACGTACCAT TGGCCCAAGC CTGGGTGCTG ACAACATCAC CAAGGGTATC GATGCGTCGC TGTGGGGCAT GTTGTTCGTC TCGCTGTTCA TCATCGCCAT CTACCGCGGC TTCGGCGTGA TCGCCACCAT CGCCCTGGCG GGCAACATGG TGCTGCTGCT GGCGCTGATG TCGCTGCTGG GTGCCACCCT GACCCTGCCG GGTATCGCCG GTATCGTGTT GACCATGGGT ATGGCGGTGG ACGCCAACGT GCTGATCTTC TCGCGTATTC GCGAAGAGCT CAAAGCCGGC ATGTCGGTGC AGCGCGCCAT CCACGAAGGT TTCAACCGCG CCTACACCGC GATCATCGAC GCCAACCTGA CCAGCCTGCT GGTCGGCGGC ATCCTGTTCG CCATGGGGAC CGGCCCGGTC AAGGGCTTTG CGGTCACCAT GTCTCTCGGG ATTTTCACCT CGATGTTCAC CGCCGTCATG GTGACCCGTG CAATGGTCAA CCTGACCTGC GGCGGGCGTG ACATCAAGAA GCTGTGGGTT TGA
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Protein sequence | MLNKYPLWKY ALIVLVLVVG FIYSAPNLYP DDPAVQISGA SSALQVNQAD LDRVSKALVD AKITVKGASL GEKGSGLIRL TNQEDQLPAK DVVRKALGDD YVVALNLAQT TPQWLRNLGA SPMKLGLDLS GGVHFLLEVD MDKAMTARMK VYEGEVKTLL RKERIRYRSL PQQDGGIMLG FADDATREQA RVLIRKNFND FDLTTTERNE LAVLRLALTQ AKVAEIREYS IKQNLTTVRN RVNELGVAEP LVQRQGANRI VVELPGVQDT AEAKRILGKT ANLEFRFGAE PGASKATTEV FEFREGGRSA PVERGLIITG DQVTDAQASF DEHGRPQVNI RLDGHGGELM SRATRSNVGR SMAVIFIEQK PVTRYVKQTV DGVEKDVAVQ SFVEEKKIIS LATIQSPLGS QFRITGLNGQ GESSELALLL RAGGLAAPMY FAEERTIGPS LGADNITKGI DASLWGMLFV SLFIIAIYRG FGVIATIALA GNMVLLLALM SLLGATLTLP GIAGIVLTMG MAVDANVLIF SRIREELKAG MSVQRAIHEG FNRAYTAIID ANLTSLLVGG ILFAMGTGPV KGFAVTMSLG IFTSMFTAVM VTRAMVNLTC GGRDIKKLWV
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