Gene PputGB1_0878 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_0878 
SymbolsecD 
ID5868638 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp1010527 
End bp1012389 
Gene Length1863 bp 
Protein Length620 aa 
Translation table11 
GC content62% 
IMG OID641545979 
Productpreprotein translocase subunit SecD 
Protein accessionYP_001667124 
Protein GI167031893 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.16793 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGAACA AATACCCTCT GTGGAAATAT GCACTGATCG TGCTGGTACT GGTGGTCGGT 
TTCATTTATT CCGCTCCCAA CCTTTACCCG GATGACCCGG CAGTACAGAT CAGCGGTGCC
AGCTCGGCGC TGCAGGTGAA CCAGGCCGAC CTCGATCGCG TCAGCAAGGC GCTGGTCGAT
GCCAAAATCA CCGTCAAGGG CGCCAGCCTG GGTGAGAAGG GCAGCGGGCT GATCCGCCTG
ACCAATCAGG AAGACCAACT GCCAGCCAAA GATGTCGTGC GCAAGGCACT GGGCGATGAT
TACGTCGTGG CCCTCAACCT GGCTCAGACT ACCCCGCAAT GGCTGCGCAA CCTGGGTGCA
AGCCCGATGA AGCTGGGCCT GGACCTGTCC GGTGGTGTGC ACTTCCTGCT GGAAGTGGAC
ATGGACAAGG CCATGACTGC CCGCATGAAA GTCTACGAAG GCGAGGTCAA GACCTTGCTG
CGCAAAGAGC GCATCCGCTA CCGCAGCCTG CCTCAGCAGG ATGGCGGCAT CATGCTGGGC
TTCGCTGACG ATGCTACCCG CGAACAGGCA CGTGTCCTGA TCCGCAAGAA TTTCAATGAT
TTCGACCTGA CCACCACCGA GCGCAACGAG CTTGCGGTGC TGCGTCTGGC GCTGACCCAG
GCGAAAGTCG CCGAGATCCG CGAATACTCG ATCAAGCAGA ACCTTACCAC CGTGCGCAAC
CGCGTGAACG AGCTGGGCGT GGCCGAGCCG CTGGTACAGC GCCAGGGCGC CAACCGCATC
GTGGTCGAGC TGCCAGGCGT GCAGGACACT GCCGAAGCCA AGCGTATCCT CGGTAAAACC
GCCAACCTGG AGTTCCGCTT CGGTGCCGAG CCGGGCGCTT CCAAGGCCAC TACCGAAGTG
TTCGAGTTCC GTGAAGGCGG CCGTTCCGCC CCGGTCGAGC GCGGCCTGAT CATTACCGGT
GACCAGGTTA CCGACGCCCA GGCCAGCTTT GACGAGCACG GCCGCCCGCA AGTGAACATC
CGCCTGGATG GCCACGGTGG CGAGCTGATG AGCCGCGCTA CCCGCAGCAA CGTCGGTCGC
AGCATGGCGG TGATCTTCAT CGAGCAGAAG CCGGTCACTC GCTATGTGAA GCAGACCGTC
GACGGCGTCG AGAAGGACGT TGCCGTACAA AGCTTCGTGG AAGAGAAGAA AATCATCAGC
CTGGCGACCA TCCAGTCGCC GCTGGGCAGC CAGTTCCGCA TCACCGGCCT GAACGGCCAG
GGCGAATCGT CGGAGCTGGC CCTGCTGCTG CGTGCCGGTG GTCTGGCCGC GCCAATGTAC
TTCGCTGAAG AACGTACCAT TGGCCCAAGC CTGGGTGCTG ACAACATCAC CAAGGGTATC
GATGCGTCGC TGTGGGGCAT GTTGTTCGTC TCGCTGTTCA TCATCGCCAT CTACCGCGGC
TTCGGCGTGA TCGCCACCAT CGCCCTGGCG GGCAACATGG TGCTGCTGCT GGCGCTGATG
TCGCTGCTGG GTGCCACCCT GACCCTGCCG GGTATCGCCG GTATCGTGTT GACCATGGGT
ATGGCGGTGG ACGCCAACGT GCTGATCTTC TCGCGTATTC GCGAAGAGCT CAAAGCCGGC
ATGTCGGTGC AGCGCGCCAT CCACGAAGGT TTCAACCGCG CCTACACCGC GATCATCGAC
GCCAACCTGA CCAGCCTGCT GGTCGGCGGC ATCCTGTTCG CCATGGGGAC CGGCCCGGTC
AAGGGCTTTG CGGTCACCAT GTCTCTCGGG ATTTTCACCT CGATGTTCAC CGCCGTCATG
GTGACCCGTG CAATGGTCAA CCTGACCTGC GGCGGGCGTG ACATCAAGAA GCTGTGGGTT
TGA
 
Protein sequence
MLNKYPLWKY ALIVLVLVVG FIYSAPNLYP DDPAVQISGA SSALQVNQAD LDRVSKALVD 
AKITVKGASL GEKGSGLIRL TNQEDQLPAK DVVRKALGDD YVVALNLAQT TPQWLRNLGA
SPMKLGLDLS GGVHFLLEVD MDKAMTARMK VYEGEVKTLL RKERIRYRSL PQQDGGIMLG
FADDATREQA RVLIRKNFND FDLTTTERNE LAVLRLALTQ AKVAEIREYS IKQNLTTVRN
RVNELGVAEP LVQRQGANRI VVELPGVQDT AEAKRILGKT ANLEFRFGAE PGASKATTEV
FEFREGGRSA PVERGLIITG DQVTDAQASF DEHGRPQVNI RLDGHGGELM SRATRSNVGR
SMAVIFIEQK PVTRYVKQTV DGVEKDVAVQ SFVEEKKIIS LATIQSPLGS QFRITGLNGQ
GESSELALLL RAGGLAAPMY FAEERTIGPS LGADNITKGI DASLWGMLFV SLFIIAIYRG
FGVIATIALA GNMVLLLALM SLLGATLTLP GIAGIVLTMG MAVDANVLIF SRIREELKAG
MSVQRAIHEG FNRAYTAIID ANLTSLLVGG ILFAMGTGPV KGFAVTMSLG IFTSMFTAVM
VTRAMVNLTC GGRDIKKLWV