| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0876 |
|---|
| Symbol | tgt |
|---|
| ID | 5868636 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 1008952 |
|---|
| End bp | 1010085 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641545977 |
|---|
| Product | queuine tRNA-ribosyltransferase |
|---|
| Protein accession | YP_001667122 |
|---|
| Protein GI | 167031891 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0343] Queuine/archaeosine tRNA-ribosyltransferase |
|---|
| TIGRFAM ID | [TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming
[TIGR00449] tRNA-guanine transglycosylases, various specificities |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.321375 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCGCA CCTGTCGAAT GTCCTTCGAA CTGCTGGCCA CCGACGGCAA GGCCCGTCGT
GGTCGCATCA CCTTCCCACG CGGTACCGTG GAAACCCCGG CGTTCATGCC GGTGGGCACC
TATGGCACGG TCAAGGGCAT GCTGCCACGC GATATCGAGG CCATTGGTGC CGAGATGATC
CTCGGCAACA CCTTCCACCT GTGGCTGCGC CCAGGTACCG AGGTGATCAA GAAGCACAAC
GGCCTGCACG ATTTCATGCA GTGGAAAGGC CCGATCCTCA CCGATTCCGG TGGCTTCCAG
GTGTTCAGCC TGGGTGCCAT GCGCAAGATC AAGGAAGAGG GCGTGACCTT CGCCTCGCCG
GTCGATGGCT CGAAGGTGTT CATGGGCCCT GAAGAGTCGA TGCAGGTGCA ACGTGACCTG
GGCTCGGACG TGGTGATGAT CTTCGACGAG TGCACCCCGT ACCCGGCCGA GCACGATGTG
GCGCGCACCT CCATGGAGCT GTCGCTGCGC TGGGCTCAGC GTTCGAAGAA CGCTCACGCC
GACAACACCG CGGCGTTGTT CGGCATCGTT CAGGGCGGCA TGTACCAGGA CCTGCGCATG
CGCTCGCTCG AAGGCCTGGA AAACATCGGT TTCGATGGCC TGGCCATCGG TGGCCTGTCG
GTGGGCGAGC CCAAGCACGA AATGATCAAG GTACTGGACT ACCTGCCGGG CCAGATGCCT
GCTGACAAAC CTCGTTACCT TATGGGGGTA GGCAAACCGG AAGATCTCGT TGAGGGTGTG
CGCCGCGGCG TCGACATGTT CGACTGCGTG ATGCCGACGC GTAACGCGCG CAACGGTCAT
CTGTTCGTCG ATACAGGGGT GATCAAGATC CGCAATGCGT TCCATCGCCA TGATGAATCG
CCGCTGGATC CGACCTGTGA CTGCTACACC TGCACCAACT TCTCGCGCGC CTATCTGCAT
CACCTGGACA AGTGCGGCGA AATGCTGAGC AGCATGCTGA ATACCATCCA CAACTTGCGC
CATTACCAGC GCTTGATGGC CGGTTTACGC GAGGCTATTC AACAGGGTAA ATTGGCCGCC
TTTGTCGACG CCTTCTACGC CAAGCGCGGG CTTCCTGTTC CGCCCTTGGA CTGA
|
|---|
| Protein sequence | MSRTCRMSFE LLATDGKARR GRITFPRGTV ETPAFMPVGT YGTVKGMLPR DIEAIGAEMI
LGNTFHLWLR PGTEVIKKHN GLHDFMQWKG PILTDSGGFQ VFSLGAMRKI KEEGVTFASP
VDGSKVFMGP EESMQVQRDL GSDVVMIFDE CTPYPAEHDV ARTSMELSLR WAQRSKNAHA
DNTAALFGIV QGGMYQDLRM RSLEGLENIG FDGLAIGGLS VGEPKHEMIK VLDYLPGQMP
ADKPRYLMGV GKPEDLVEGV RRGVDMFDCV MPTRNARNGH LFVDTGVIKI RNAFHRHDES
PLDPTCDCYT CTNFSRAYLH HLDKCGEMLS SMLNTIHNLR HYQRLMAGLR EAIQQGKLAA
FVDAFYAKRG LPVPPLD
|
|---|
| |