| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0842 |
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| Symbol | |
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| ID | 5868601 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 955650 |
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| End bp | 956834 |
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| Gene Length | 1185 bp |
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| Protein Length | 394 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641545942 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001667088 |
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| Protein GI | 167031857 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAACC ATGAGCTTCC GGCCTCCTAC CTGGACGGGC AGGACGATCA GGCGGTATTC
CGCGCCGGCC GCATCATCAC CCTTTGCGCG CTGATGCTGG CGGCGTTCCT GGCCTGGGCG
GCCTGGTTCG AGGTGACCGA AGTGTCCACC GGTACCGGCA AGGTCATCCC CAGTTCGCGC
GAGCAGGTGA TCCAGTCATT CGAGGGCGGC ATCGTCGCGC AGATGAGCGT GGCCGAAGGC
GACCTGGTCG AGCGCGGCCA GGTGCTGGCC CAGCTCGACC CGACCAAAAC CGCTTCCAGC
GTTGGCGAAA GCGAAGCCAA GTACCGTGCC GCCAAGGCGA GCCAGGCCCG CCTGCAGGCA
GAAGTGACCG GCAAACCGCT GACCTTCCCG GAAAGCCTGC GCGACTCTCC CGACCTGATC
GATGCCGAAA CCGCCCTGTA CCAGACCCGA CGCCGTGGCC TGGAACAGAC CCTCGCTGGC
ATTCAGGACT CGCTGCAACT GGTGCGCAGC GAGCTGCAGA TCACCGAGAA CCTGGCGAAG
ATGGGCGCCT CCAGCCGGGT CGAGGTGATC CGCCTGAACC GCCAGCGTTC AGAGCTCGAG
CTCAAGGCCA ACGAAGCCCG CTCCGACTAC CTGGTACGTG CCCGGGAAGA ACTGGCCAAG
GCCAGCGCCG AAGCGGACAG CCTGTCGGAA GTGATCCGCG GGCGCAGCGA CTCGCTCACC
CGCCTGACCC TGCGCTCGCC GGTGCGCGGC ATCGTCAAGG ACATCGAAGT CAATACCTTG
GGCGGCGTGG TGCAACCGGG CGGCCAGGTA ATGAAAATCG TGCCGATGGA CGAGCGCCTG
TTGATCGAAA CCCGCATCGC CCCGCGTGAT ATCGCCTTCA TCCACCCCGG CCAAGCGGCC
AAGGTCAAGA TCAGTGCCTA TGACTACTCG GTGTATGGCG GGCTGGATGG CAAGGTGGTG
GGCATTTCGC CGGATACCCT GCAGGATGAG GTGAAGCCGG AGATCTACTA CTACCGCGTG
TTCATCCGCA CCGAGCAGGA CAGCTTGCAG AACAAGGCCG GCAAGCATTT CGCGATCGTG
CCGGGGATGA TTGCCACGGT GGATATCCGC ACCGGTGAGA AGACCATCCT CGATTACCTG
ATCAAGCCGC TGAACCGGGC CAAGGAGGCC CTGCGCGAAC GGTAG
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| Protein sequence | MSNHELPASY LDGQDDQAVF RAGRIITLCA LMLAAFLAWA AWFEVTEVST GTGKVIPSSR
EQVIQSFEGG IVAQMSVAEG DLVERGQVLA QLDPTKTASS VGESEAKYRA AKASQARLQA
EVTGKPLTFP ESLRDSPDLI DAETALYQTR RRGLEQTLAG IQDSLQLVRS ELQITENLAK
MGASSRVEVI RLNRQRSELE LKANEARSDY LVRAREELAK ASAEADSLSE VIRGRSDSLT
RLTLRSPVRG IVKDIEVNTL GGVVQPGGQV MKIVPMDERL LIETRIAPRD IAFIHPGQAA
KVKISAYDYS VYGGLDGKVV GISPDTLQDE VKPEIYYYRV FIRTEQDSLQ NKAGKHFAIV
PGMIATVDIR TGEKTILDYL IKPLNRAKEA LRER
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