| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0829 |
|---|
| Symbol | |
|---|
| ID | 5868588 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 940470 |
|---|
| End bp | 942212 |
|---|
| Gene Length | 1743 bp |
|---|
| Protein Length | 580 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641545929 |
|---|
| Product | PTS system, fructose subfamily, IIC subunit |
|---|
| Protein accession | YP_001667075 |
|---|
| Protein GI | 167031844 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1299] Phosphotransferase system, fructose-specific IIC component
[COG1445] Phosphotransferase system fructose-specific component IIB |
|---|
| TIGRFAM ID | [TIGR00829] PTS system, fructose-specific, IIB component
[TIGR01427] PTS system, fructose subfamily, IIC component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.645522 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATTG CCATTGTCAC CGCCTGCCCC AACGGCCAGG TATCGAGTGT GCTGAGCGCG
CGCCTGCTGG CTGCCGCTGC CCAGCGACGT GGTTGGAGCA CCAGTGTCGA AGTGCTGGAT
GCCGAGCACC CTGAGCGGCA ACTGAGTGCG GCACAGATCG CCGAGGCCGA CTGGGTGCTG
GTGGTCAGCA CCGGCCCGGT GGACCTGGCC CGCTTCGTCG GCAAGCGCCT ATACAAGAGT
ACGCCGTCCC AGGCCTTGGC TGATCGCGAG GGCTTCCTCG ACGAAGCGGC CGCCAACGCC
CAACTGCTGA GCGCATTGCC AGACACCCCG GCCGCAGCTG GCAGCGCCGC TGCTCGTATC
GTTGCCGTCA CTGCCTGCCC GACCGGCGTT GCGCACACCT TCATGGCTGC AGAAGCTTTG
CAGCAAGCCG CACAGCAACT GGGATACCAG CTCACCGTCG AGACCCAGGG CTCGGTCGGT
GCGCGCAACC CGTTGTCCGC CGAAGCCATC GCTGCAGCAG ACGTGGTGTT GCTGGCCGCC
GACATCGAAG TACCCACCGC GCGTTTCGCC GGCAAGCGTA TTTACCGCTG CGGCACCGGC
ATCGCCCTCA AGCAGGCCCG CGCCACGCTG GACAAAGCCT TGGCCGAAGC CAAGGTGGAA
AACAGTGCAG AGGCTGCGGC GGCCAGCACG GCAGCCAAAG GCGAGAAGAG TGGGGTATAC
AAGCACCTGC TCACTGGCGT GTCGTTCATG CTGCCGATGG TGGTGGCCGG TGGCCTGCTG
ATTGCCCTGT CGTTCGTGTT CGGCATCGAG GCCTACAAAC AGCCGGGCAC CTTGCCGGCG
GCGTTGATGC AGATTGGCGG CGAGGCTGCG TTCAAGCTGA TGGTGCCTTT GCTGGCCGGT
TACATCGCCT GGTCCATTGC CGACCGACCG GGGTTGGCCC CAGGCATGAT CGGCGGTTTG
CTGGCCAGCA CCCTGGGGGC TGGTTTCATT GGTGGCATCG TCGCGGGTTT TCTTGCCGGT
TACAGCGCCA AGGCCATTGC CCGTTGGGCG CGCTTGCCGA GCAGCCTGGA AGCGCTCAAG
CCGATCTTGA TCATTCCGCT GCTGGCCAGC CTGTTCACCG GCCTGGTGAT GATCTACGTG
GTTGGCCAGC CGGTAGCGGC GATGCTCGAA GGCCTTACGC ACTTCCTCGA CAGCATGGGC
ACCACCAATG CCATTCTGCT GGGGCTGTTG CTGGGCGGCA TGATGTGCGT CGACCTTGGC
GGGCCGATCA ACAAGGCCGC CTATGCGTTC TCGGTGGGGC TGTTGGCTTC GTCGAGCTAC
GCGCCGATGG CGGCGACCAT GGCCGCTGGC ATGGTGCCGC CGATCGGCCT GGGTATTGCC
ACCTTCCTGG CCCGGCGCAA GTTCGCCCAG AGCGAGCGTG AGGCGGGCAA GGCGGCACTG
GCGCTGGGCT TGTGCTTTAT CTCCGAGGGG GCTATCCCGT TTGCCGCCAA GGACCCGCTG
CGGGTGATCC CGGCCAGTAT CGTCGGCGGT GCGCTGACCG GTGCATTGTC GATGTACTTT
GGCTGCAAGC TGATGGCACC GCATGGCGGC TTGTTCGTGC TGTTGATCCC CAATGCGATC
AACCATGCGC TGCTGTACTT GCTGGCGATC GTGGCGGGCA GCCTGTTGAC GGCGGTGGTG
TATGCGGTGA TCAAGAAGAG CGAGCAGGTG GAGCTGGCGG TGGCGCCGGT TAAAAGTGCC
TGA
|
|---|
| Protein sequence | MNIAIVTACP NGQVSSVLSA RLLAAAAQRR GWSTSVEVLD AEHPERQLSA AQIAEADWVL
VVSTGPVDLA RFVGKRLYKS TPSQALADRE GFLDEAAANA QLLSALPDTP AAAGSAAARI
VAVTACPTGV AHTFMAAEAL QQAAQQLGYQ LTVETQGSVG ARNPLSAEAI AAADVVLLAA
DIEVPTARFA GKRIYRCGTG IALKQARATL DKALAEAKVE NSAEAAAAST AAKGEKSGVY
KHLLTGVSFM LPMVVAGGLL IALSFVFGIE AYKQPGTLPA ALMQIGGEAA FKLMVPLLAG
YIAWSIADRP GLAPGMIGGL LASTLGAGFI GGIVAGFLAG YSAKAIARWA RLPSSLEALK
PILIIPLLAS LFTGLVMIYV VGQPVAAMLE GLTHFLDSMG TTNAILLGLL LGGMMCVDLG
GPINKAAYAF SVGLLASSSY APMAATMAAG MVPPIGLGIA TFLARRKFAQ SEREAGKAAL
ALGLCFISEG AIPFAAKDPL RVIPASIVGG ALTGALSMYF GCKLMAPHGG LFVLLIPNAI
NHALLYLLAI VAGSLLTAVV YAVIKKSEQV ELAVAPVKSA
|
|---|
| |