| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0772 |
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| Symbol | |
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| ID | 5868531 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 880877 |
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| End bp | 881365 |
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| Gene Length | 489 bp |
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| Protein Length | 162 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641545872 |
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| Product | Hcp1 family type VI secretion system effector |
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| Protein accession | YP_001667018 |
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| Protein GI | 167031787 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 51 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATTTG ACGCTTATAT AAAAATCGAC GACATCGCGG GCGAAGCTCT GGATGAAAAG
CACAGCAAAT GGATTGAAGT CACCGGTTAT GATTTCGGTG TAAGCCAAAG CACTTCCGCC
ACTGCCAGCT CGGCAGGGGG CGCCACTTCG GGGCGCGCCG AGGTGAGCCA CTTCACTTTT
ACCAAGTTTC TCGACAGCGC CAGTTGCAAG CTCATGGAGG CCAGCTGCGC AGGGCAGCAT
CTCAAGGAGG TCAAACTCGC ACTGTGCCGC GCGGGCGGCG ACAAGCTCAA GTATTACGAG
ATTATTCTCG AAGAAGTGAT CATTGCAGAC TACACACAGA GTGCTGCCGA TGGCGTGCCT
GTCGAGGTAG TTCGCCTCGA TTACGGAAGG ATCAAGACCA CCTACACCTT ACAGAAGCGT
ATCGACGGTT CGGGCGGCGG CAATATTGCC GGCGGTTGGG ACCGGATCGG CAACAAGAAA
TACGCGTGA
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| Protein sequence | MAFDAYIKID DIAGEALDEK HSKWIEVTGY DFGVSQSTSA TASSAGGATS GRAEVSHFTF
TKFLDSASCK LMEASCAGQH LKEVKLALCR AGGDKLKYYE IILEEVIIAD YTQSAADGVP
VEVVRLDYGR IKTTYTLQKR IDGSGGGNIA GGWDRIGNKK YA
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