| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0769 |
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| Symbol | |
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| ID | 5868528 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 877584 |
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| End bp | 879305 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641545869 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001667015 |
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| Protein GI | 167031784 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | [TIGR02996] repeat-companion domain TIGR02996 |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAAC CATACGCATT GCTGCTTGCC TTCGCCCTGC TCCAGGGCTG CCAGAGCCTG
GCCCCGCAAA AAGCCGAGCC TCCCGTCGCC GAAGCCGGCA AGGGCGAGGC GGAAAAGCCC
GTGGTGTATG GCTCGTTCAA GCAGGACACA CTCTATAGCC TGTTGGTAGC CGAGCTGGCC
GGCCAGCGCA ACCGCTTCGA CATCGCCCTG GCCAACTACA CCGACCAGGC GGCAAAAACC
CAGGACCCTG GGGTTTCCGA GCGCGCCTAC CGCATTGCCG AATACCTCGG CGCTGACGAG
CCGTCGCTGG ACAATGCATT AGTCTGGGCC CGTAACGACC CGCAGAACCT CGACGCCCAA
CGTGCCGCCG CCATCCAACT GGCCCGCGCT GGCCGCTATG ACGACTCCAT GGCCTACATG
GAAAAGGTTC TGCAGGGCCA GGGCGACACC CACTTCGACT TCCTCGCCCT GTCTGCGGCC
GAAACCGACC AGAGCACCCG CGACGGCCTG CTGCAAAGCT TCGAGCGCCT GCTGGTGAAA
TACCCTGATA ACGGCCAACT GGTATTCGGC AAGGCCTTGT TGCTGAATCA GGACGGCAAG
GCCGAAGAAG CCCTGGAGCT GCTCGAATCG CACCCGGCTC AAAACGGCGA AATTGCCCCG
ATCCTCCTGC GCGCTCGCCT GTTGCAGGCC CTGGACCGTG GTCCGGAGGC TCTGCCACTG
CTGCGCGGCG CAATCCGCGA CAACCCGGAC GACAAACGCC TGCGCCTGAC CTACGCCCGC
ACCCTGGTCG AACAGGACCG CATCGCCGAT GCCAAGGGCG AGTTCCTCAG CCTGGTCCAG
CAATACCCCG ATGATGACGA ACTGCGCTAC TCGTTGGCCT TGGTGTGCCT GGAGAACAAA
GACTGGGATG AAGCCGAAGG CTACCTGCAG GAATTGATCG AGCGTGAGAG CAACGTCGAC
GCCGCACACC TGAACCTGGG CCGCATCCGC GAGGAGCGCC ACGACCCTGC TGGCGCCCTG
CGTGAGTACG CCCTGGTCGG CCCTGGCCCC GACTACTTGC CGGCACAACT GCGCCAGGCC
GACATCCTGA TCGCCAACGG CCGCAGCAGC GAGGCCTCGC GCCTACTTGC CGAAGCCCGC
AAAGCCCAGC CAGACTACGC CATCCAGCTG TACCTGATCG AATCGGAAAG CTACAGCAAC
AACAACAAGG ACGCCCAGGC CAGCCAGGTG CTGCAGCAAG CCATCCAGCG CTACCCGGAC
GACCTCAACC TGCTGTACAC CCGCGCCATG CTGGCCGAAA AGCGCGACGA CCTGGCGCAA
ATGGAGAAAG ACCTGCGCGC CATCATCGCC CGCGAGCCAG AAAACGCCAT GGCCCTGAAC
GCCCTGGGCT ACACCCTGGC CGACCGCACC ACTCGCTATA CCGAAGCCAA GGCACTGATC
GACAAAGCCC ACCAGCTGAC CCCGGACGAC CCGGCAGTGC TCGATAGCCT GGGCTGGGTC
AGCTACCGCC TGGGCAACCT CGACGCAGCG GAAACCTACC TGCGCCAGGC CTTTGCCAGC
TTCCCCGACC ACGAAGTGGC CGCTCACCTG GGCGAAGTGC TGTGGGCCAA TGGCAAGCGC
CGTGAAGCCC GCCAGGTCTG GGCGAAGGGC TTCGAAGCCC AGGCCGACAG CCCCATCCTG
CGCAAGACCA TTTTGCGCCT GACCGGATCC GAGACTCTTT AA
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| Protein sequence | MNKPYALLLA FALLQGCQSL APQKAEPPVA EAGKGEAEKP VVYGSFKQDT LYSLLVAELA
GQRNRFDIAL ANYTDQAAKT QDPGVSERAY RIAEYLGADE PSLDNALVWA RNDPQNLDAQ
RAAAIQLARA GRYDDSMAYM EKVLQGQGDT HFDFLALSAA ETDQSTRDGL LQSFERLLVK
YPDNGQLVFG KALLLNQDGK AEEALELLES HPAQNGEIAP ILLRARLLQA LDRGPEALPL
LRGAIRDNPD DKRLRLTYAR TLVEQDRIAD AKGEFLSLVQ QYPDDDELRY SLALVCLENK
DWDEAEGYLQ ELIERESNVD AAHLNLGRIR EERHDPAGAL REYALVGPGP DYLPAQLRQA
DILIANGRSS EASRLLAEAR KAQPDYAIQL YLIESESYSN NNKDAQASQV LQQAIQRYPD
DLNLLYTRAM LAEKRDDLAQ MEKDLRAIIA REPENAMALN ALGYTLADRT TRYTEAKALI
DKAHQLTPDD PAVLDSLGWV SYRLGNLDAA ETYLRQAFAS FPDHEVAAHL GEVLWANGKR
REARQVWAKG FEAQADSPIL RKTILRLTGS ETL
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