Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0704 |
Symbol | |
ID | 5868461 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 802912 |
End bp | 806742 |
Gene Length | 3831 bp |
Protein Length | 1276 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641545802 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001666950 |
Protein GI | 167031719 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.116377 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGACCAACC TTACTCATCC GTCGTCATTG CGTACCGCGC AACAAGCGCC CGCCGTTACC CTGCGCGGGT CGATCAAGGG TGCGCTGGCA CTGTTGGCCC TGATTCTGCT GGGCCTGCTG CTGTGGCAAC TATTCGCCCA GTTCAACCAT ACCCAGGCCG ACCTGCGCAA ACAGAGCCTG GACGCCACCG CGGAACTGGC CGACCACCTG AGCCTGAACA TGGCGTTCAA GGCGCAGCAG GCAGTGAATG TGGTGCAGCC CTATGTCAAT GCACCGACAC CCGCTGCCCT GCCGAGCCTG GTGGACACCC TGCGCGAGCG CCTGCCTGCC TTGCAAAGCG TGGCCTGGCT GGACAGTGCC GGGCAACTGC GCGTCGACAG CCTGGCCGGC AGCCCGGACC GCCAGTTGCT TGACGAACTG CTGACACTGA ACCAGGGGCG CCCGTACTTC TTCACCAATT CGGCCGACAA CCGCACCCTG TATCTGTTGC TGCGCCAGGC CGCCGAACAG GACCGTGGCT ACTGGTTGCT GCGCCTTTCA CCGGACTACT ACCGCGAGCT CACCCTCTAC CTCGATGGTG GCGGCCACCC GCTGTGGCTG CTGGAGAACA GCCGCAGTGG CGAGGTGCTG CAGAGCCACG CCCCAACCGA TACCAGCAAC GCGCCGCTGC AAAGCGTGAT GCTGGCCTTC ATCGACAACA GTACCTGGCA GTTGCGCGGC CTGTTCGACG CCGAGCTGGC CCAGCAAAAG TTATTGCCGG CGCTGATCGG CAAATGCCTG CTGGTGCTGT TTTGCGCCCT GCTGCCGGTG CTGGCGCTGA TCAACATGCG CCGCCGCCAG CGCGCCCTGC AGGAAGACCG CCGGCGCTAT CAGGAAATTT TCGAAGGCAC CGGCGTGGCC CTGTGCGTGC TCGATTTGTC CAGCCTGCCC AGCCAGCTCG ACCGCTACCA CCTGCGCAAC CGCGCTGCGC TCAAGCACAG CCTGGCGCTG GACCCGAACC TGCGTCGCTC GCTACTGCTG GAGCTGAAGA TCACCGAGGT CAACCAGGTG GCGCGCCAAC TGCTGAACAT CGAGTGCCAC GAAGGCGCAT GGCAGCGGCT GATCGACGGC ACCGGCGATG GCCGCGACAG CGTCGGCATG CAGCTGATCG ACGCACTGAT CGAGCAACGC CAGCTGCTTG AGCTGGAAGT GCGCCTGCCG GCACCGCTGG GCGGCGAGCT GCACCTGTGG TTGATGGCGC GCCTGCCGCA GCAGCGCCGC GACTACCAGG CAGTGATCCT CAGCATCAGC GACATCACCA GCCGCAAACA GGTCGAGCTG TCGCTGCTGG AGCGCGAAGG CTTCTGGTCG GACGTGGTGC GCACCGTACC CGACCAGTTG TACGTGCAGG ATGTGCTGAG CCAGCGGATG ATCTTCAGCA ACCGTCACCT CGGCCAGACC CTGGGCTACG ACCGTACCGA GCTGGCACAG ATGGGCGACC GCTTCTGGGA GCTGCTGCTG CACCCCGAGG ATGCCGCGCA CTACCAGGCC CTGCGCCAGC AACAGCGCGA CAGCGGCCAT GACCAACCGC TGCAATGCCA GTTGCGCTTC CGCCACCGCG ACGGCGGCTG GCGCTGCTAC GACATTCGCG AGCAGGTGCT GACCCGCGAT GCCGAAGGCC TGGTGACGCG CATCATCGGC GTGGGCAAGG ATGTGACCGT GCAGATCGAG GCCAGCCAGT CGCTACGCGA CAGCGAGCAG CGCTACCGCA TGCTCGCCGA AAGCATCAGC GACGTGATCT TCTCCACCGA CAGCCTGCTC AAGCTCAACT ATGTAAGCCC CTCGGTGCAG AGCGTGCTGG GCTACCAGGC CGACTGGATT TTCGCCAACG GCTGGCAGTC GATCATCGCC AACCCGGCCC AGCTCACCGG CATCTACAGC CTGATGGAGC GCGTCAGCAA AGCCATGGGG GAGCCATCGC AACTGGCGCA ACTGCGCAGC CAGCTACCGA CCCAGCTGTT CCTGTTCGAC TGTCTGCGTG CCGATGGCCG CAAGATCCCC ATCGAGCTGC GTCTGGTGCT GGTGTGGGAC GATGACCAGC GCTTTGAGGG CGTGCTTGGG GTGGGCCGCG ACATCAGCCA GCAACGCCGT GCCGAAAAAG ACCTACGCAT GGCCGCAACG GTATTCGAAC ACTCCACGTC GGCGATCCTC ATCACCGACC CGGCCGGCTA CATCGTCCAG GCCAACGAGG CGTTCAGCCG CGTCAGTGGG TACGCCGTCA GTGAAGTGCT CGACCAGTTG CCGGGCATGC TCACCGTCGA CGAACAGCAG GAGGGCCACC TGCGCTATGT GGTCAAGCAA CTGCACCAGC GCGGCAGTTG GGAAGGCGAG GTGTGGCTCA AGCGCCGTGA CGGCGACCAC TACCCGGCCT GGGTGGGCAT CACGGCGGTA CTGGACGACG AAGGCGACCT GGCCAGCTAC GTGTGCTTCT TCACCGACAT CAGCGAGCGC AAAGCCAGCG AACAGCGCAT CCACCGCCTG GCCTACTACG ACGCCCTCAC CCACCTGCCC AACCGCACGC TGTTCCAGGA CCGTTTGTAC AACGCCCTGC AACAGGCCGA GCGGCAGAAG GCCTGGGTGG TGCTGATGTT CCTCGACCTC GACCGTTTCA AGCCGATCAA CGACTCCCTC GGCCATGCCG CCGGCGACCG CATGCTCAAG GACATGGCCC TGCGCCTGCT GGCCTGCGTG GATGACGACG ACACCGTGGC ACGCATGGGC GGCGACGAGT TCACCCTGCT GCTGCAACCG CGCCCCACCC GCGAGATGGC CCTGAACCGC GCCATCCATG TGGCCGAGAA CATTCTCGGC AGCCTGGTGC GGCCGTTTGT GCTGGAAAAC CGTGAATTCT TCGTCACGGC CAGTATCGGC ATCGCCCTCA GCCCGCAGGA TGGCAGCGAG CTGAGCCAGT TGATGAAAAA CGCCGACACC GCCATGTACC ACGCCAAGGA ACGCGGCAAG AACAACTTCC AGTTCTACCA GGCCGAAATG AACGCCAGCG CACTGGAGCG CCTGGAGCTG GAAAGCGACT TGCGCCATGC CATGGAGCAG AACGAGTTCA TCCTGTACTA CCAGCCGCAG TTCAGCGGCG ACGGCAAGCG CCTGACGGGC GCCGAGGCCC TGCTGCGCTG GCGCCACCCA ACCCGTGGTC TGGTGCCACC GGGCGACTTT ATCCCGGTGA TCGAAGAACT GGGCCTGGTG GTGGACGTGG GTGACTGGGT GCTGCGCGAG GCCAGCCGCC AGCTCAAGGC CTGGCACAAG GCCAAGGTGC GGGTACCCAA GGTGTCGGTG AACATATCGG CGCGGCAGTT CTCGGACGGG CAACTGGGCA CGCGGATTGC CAATATCCTC GAAGAAAGCG GCCTGCCACC GGCATGCCTG GAGCTGGAGC TGACCGAAAG TATCCTGATG CGCGAAGTGA ACGAGGCGCT GCAGATTCTT GCCAGCCTGA AAAACCTCGG CCTGAGCATT GCGGTGGACG ACTTCGGCAC GGGTTACTCG TCGCTCAACT ACCTCAAGCA GTTCCCCATC GACGTACTGA AGATCGACCG CACCTTCGTC GACGGCCTGC CCGAAGGCGA GCAGGACGCG CAGATCGCCC GGGCGATCAT CGCCATGGCC CACAGCCTCA ACCTGGCGGT AATCGCCGAG GGCGTGGAAA CCCACGAACA GCTGGAGTTC CTGCGCGAGC ATGGCTGCGA CGAGGTGCAG GGCTACCTGT TTGGGCGGCC GATGCCGGCG CATCAGTTCG AGGCGCAGTT CTCCAACGAG ACCCTGTTCA TGTTCCATTG A
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Protein sequence | MTNLTHPSSL RTAQQAPAVT LRGSIKGALA LLALILLGLL LWQLFAQFNH TQADLRKQSL DATAELADHL SLNMAFKAQQ AVNVVQPYVN APTPAALPSL VDTLRERLPA LQSVAWLDSA GQLRVDSLAG SPDRQLLDEL LTLNQGRPYF FTNSADNRTL YLLLRQAAEQ DRGYWLLRLS PDYYRELTLY LDGGGHPLWL LENSRSGEVL QSHAPTDTSN APLQSVMLAF IDNSTWQLRG LFDAELAQQK LLPALIGKCL LVLFCALLPV LALINMRRRQ RALQEDRRRY QEIFEGTGVA LCVLDLSSLP SQLDRYHLRN RAALKHSLAL DPNLRRSLLL ELKITEVNQV ARQLLNIECH EGAWQRLIDG TGDGRDSVGM QLIDALIEQR QLLELEVRLP APLGGELHLW LMARLPQQRR DYQAVILSIS DITSRKQVEL SLLEREGFWS DVVRTVPDQL YVQDVLSQRM IFSNRHLGQT LGYDRTELAQ MGDRFWELLL HPEDAAHYQA LRQQQRDSGH DQPLQCQLRF RHRDGGWRCY DIREQVLTRD AEGLVTRIIG VGKDVTVQIE ASQSLRDSEQ RYRMLAESIS DVIFSTDSLL KLNYVSPSVQ SVLGYQADWI FANGWQSIIA NPAQLTGIYS LMERVSKAMG EPSQLAQLRS QLPTQLFLFD CLRADGRKIP IELRLVLVWD DDQRFEGVLG VGRDISQQRR AEKDLRMAAT VFEHSTSAIL ITDPAGYIVQ ANEAFSRVSG YAVSEVLDQL PGMLTVDEQQ EGHLRYVVKQ LHQRGSWEGE VWLKRRDGDH YPAWVGITAV LDDEGDLASY VCFFTDISER KASEQRIHRL AYYDALTHLP NRTLFQDRLY NALQQAERQK AWVVLMFLDL DRFKPINDSL GHAAGDRMLK DMALRLLACV DDDDTVARMG GDEFTLLLQP RPTREMALNR AIHVAENILG SLVRPFVLEN REFFVTASIG IALSPQDGSE LSQLMKNADT AMYHAKERGK NNFQFYQAEM NASALERLEL ESDLRHAMEQ NEFILYYQPQ FSGDGKRLTG AEALLRWRHP TRGLVPPGDF IPVIEELGLV VDVGDWVLRE ASRQLKAWHK AKVRVPKVSV NISARQFSDG QLGTRIANIL EESGLPPACL ELELTESILM REVNEALQIL ASLKNLGLSI AVDDFGTGYS SLNYLKQFPI DVLKIDRTFV DGLPEGEQDA QIARAIIAMA HSLNLAVIAE GVETHEQLEF LREHGCDEVQ GYLFGRPMPA HQFEAQFSNE TLFMFH
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