Gene PputGB1_0618 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_0618 
Symbol 
ID5868364 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp705059 
End bp706723 
Gene Length1665 bp 
Protein Length554 aa 
Translation table11 
GC content64% 
IMG OID641545706 
Productpolypeptide-transport-associated domain-containing protein 
Protein accessionYP_001666865 
Protein GI167031634 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2831] Hemolysin activation/secretion protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.475083 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.135926 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTCCTC TGGCCGTGCC CCTGCTGTTG CTGCCCTGGG CGCTTGCGGC CCAGGGCGAG 
CCGTTGCCGG GTTTTCTCGA CAGCCATGAA TACGAGCGGC GCTTGCCCAG CGCCAACCTG
CCGATTGCGG CCTACCGCCT CGTCAGCCCC AACATACGGC TGGCCGAGGC GGCTATCCAC
AAGCCTGACT GGGCTTCGGC CAATACCCCG CTGATACTGC AAAAAGTACG CTTCGAGGGC
GGCACGGTGT TCCCCCTGAG CGACCTGCGT GAGCACTACC AAGCGCTGAT AGGGCGCCAG
ACCACGTTGG GTGAATTGCA GCAATATACC GAGCGGCTGA CCCAGCGTTA TCGGCAGCAG
GGCTACTTGT TGTCGTATGC CTATCTGCCA CCGCAGGATG TGGCAGAGGG TAGGGTCAGC
GTGGTGCTGG TCGAAGGTTA CCTCCGTGAT TACCGCGTGG ACGGCGATAT CGGCCCGGCC
AGCGAGTATT TGCAACAGTT GCTGGCGCGC CTTGAGGCTG AGCGGCCGCT GACGCGGGAA
ACGCTGGAGC GTTTTCTGGG CCTGGCCGCG CGCATGCCTG GTGTGTCGGT AGAGGCTGAG
CTGACAATGG CGCAGGCCGC TGATGGCGCC GCCCGGCTGA CCCTGCATGC GCGGCGCAAG
CCATTCGGCG CCGCTGTGAC GGTGACCGAC TCCAGCCGCG ACACTGCACA GGCGTTGTTC
ACGGCAACCA GCAATGCCCA GACCCGCCAT GGTGAACAAC TCACGGCCAG TTGGCTGCTG
CCTCCAGGAG ACGACCAGGT CCATTACCAG CGTCTGGACT ACAGCCAGTA CCTGGACGCC
GCCGGCAGTC AACTGCTGCT GTCGGCTTCG CGCTACCGCA GCGAGCCCGG CACGCGCATA
CGCCTTGACC ATGGTCGCGA TATCACCCGC GAGCACGACA GCGAGCGCTG TGCGATAGGG
CTTCGTCAGC CGGTGATCGT CAGGCCGGAT GAGTGGCTGG TGGTTCAGGG GCACTTGTAC
GCAGTTCGTG AGCGCGATGA AGACCACACG GATGAGCAGC CATCGTCTCG GGACTACGAC
ACCTACGTGC GTGCGCTGTC GTTCGAGGGC GATTGGCGCG AGATGGAGCA GAGGCGTATG
CGTATCGTCA GTGCTGGAGT CTATCAGGGC CTGGATTACC TTGGGGCTCG AAGCGATGCC
GACTACGACC TGGACTTTCT GCGGCTGCGG CTTTCCGGCT TGCAGAGCGA CGCACTGCTG
GATAACTGGC AGGGCGTGGT GTCCGGGGCC TTGTACTGGA GTGATGACAA GTTGCCCGAC
AGCGAGCGCG CGGGTTTTGG CGGGCAGAGT TTTGGCCGTG GATACCCGCG TGACCAGGCG
GACGGGGACA AGGGCTGGGG TGTGGCTTAC GAGCTGAGCT ACAGCATGCA GGGGAGCGGG
CTGGCGCTGG TTCGGCCATA TGCGGCAGTG GACACGGCGC AGGCCTGGCA TAACCGAGGG
CCGGTGGAGG ATGCCCACCT GGCGTCGCTG GCGTTTGGTG TGCGGTTAGG AGATGGGCGC
GTGTTCAATG TGGCGCTGGA AGTGGCCAAG CCGTTGGCGG ATGTGGCGCT CGATAGCCTG
GACCGTGGGC CTCGGCTGAC CTTGAGCGTT GACGTTCAAC TGTAG
 
Protein sequence
MRPLAVPLLL LPWALAAQGE PLPGFLDSHE YERRLPSANL PIAAYRLVSP NIRLAEAAIH 
KPDWASANTP LILQKVRFEG GTVFPLSDLR EHYQALIGRQ TTLGELQQYT ERLTQRYRQQ
GYLLSYAYLP PQDVAEGRVS VVLVEGYLRD YRVDGDIGPA SEYLQQLLAR LEAERPLTRE
TLERFLGLAA RMPGVSVEAE LTMAQAADGA ARLTLHARRK PFGAAVTVTD SSRDTAQALF
TATSNAQTRH GEQLTASWLL PPGDDQVHYQ RLDYSQYLDA AGSQLLLSAS RYRSEPGTRI
RLDHGRDITR EHDSERCAIG LRQPVIVRPD EWLVVQGHLY AVRERDEDHT DEQPSSRDYD
TYVRALSFEG DWREMEQRRM RIVSAGVYQG LDYLGARSDA DYDLDFLRLR LSGLQSDALL
DNWQGVVSGA LYWSDDKLPD SERAGFGGQS FGRGYPRDQA DGDKGWGVAY ELSYSMQGSG
LALVRPYAAV DTAQAWHNRG PVEDAHLASL AFGVRLGDGR VFNVALEVAK PLADVALDSL
DRGPRLTLSV DVQL