Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0614 |
Symbol | |
ID | 5868360 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 695662 |
End bp | 696999 |
Gene Length | 1338 bp |
Protein Length | 445 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641545702 |
Product | MATE efflux family protein |
Protein accession | YP_001666861 |
Protein GI | 167031630 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.0166177 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCCAAC TCTCCGCCGA CTGGCGCCAC CGCCCTACCC ACCACAAGGT CTGGGCGCTG GCCGCACCGA TGATCTTGTC CAACATCTCC GTACCGCTGG TGGCGCTGGT CGACAGCACC GTCATCGGCC ACCTCCCCCA CGCCCACCAG CTAGGCGCCG TGGCCGTGGG CGCCACTTTG TTCACCTTCA TGGTTGGCCT GATGGGCTTC CTGCGCATGG GCTCCACTGG CTTCGCCGCA CAGGCCGCTG GCCGTGGCGA CGGCGCCGCG TTGCGCCAGG TGCTGGTACA AGGGCTGCTT TTGGCGGTCG GTTTCGCCCT GATGATCGGC CTGCTGGCTC TGCCGTTCAG CCAGCTGGCA CTGCATGCGA TGCAACCCAG TGCAGCCCTG CAGCAATCCA CCGAAGACTT CTTCCATACC CGCCTGCTTG GCCTGCCTGC GGCGCTTGCC AGCTATGCGC TGGTTGGCTG GTTTCTGGGC ACCCAGAACG CCCGGGCGCC ACTGGCCATC CTGCTGACCA CCAACCTGCT GAACATCGTC CTGAACCTGT GGTTCGTGCT GGGCCTGGAT TGGGGCGTAC TGGGGTCGGC ACGGGCTTCG GTCATTGCCG AATGGAGCGC CGCGCTGCTC GGCCTGGCCC TGACCCGCCC GGCACTGCGT GCCTACCCGG GGCAGATCGC CTGGGCAGCG CTCAAACGCT GGCAGGCCTG GCGCCCGCTG CTGGCGGTCA ACCGCGATAT TTTCCTGCGC AGCCTGGCGC TGCAACTGGT GTTCCTGCTG ATTACTGTGC AGGGGGCGCG CCTGGGTGAG GCCACGGTGG CGGCCAACGC CCTGCTGCTC AATGGCCTGC TGCTGACGGC CTATGCCCTC GACGGGCTGG CGCATGCGGT CGAGGCCCTG TGCGGCCATG CCATTGGTGC CCGCGACCGC GACACCTTGC GCCGTTCGTT GGTGGTGGCC TGTGGCTGGT CGCTGATCAC CAGTTTGGGG TTTGCCGGGT TGTTCCTGCT GGGCGGGCAC TTGTTCATCG ACCTGCAGAC CGACATCGAA AGCGTGCGCA ATGCGGCCTA TCCGTATTTG CCCTACCTGG CGGTACTGCC GTTGATTGCA GTGTGGAGTT ACTTGCTGGA TGGGTTGTTC ATCGGTGCGA CGCGGGCGCG GGAGATGCGC AATGCGATGG TGGTGTCGGT ACTGATTGCA CTGCCGGTGG CGGTGGCCAT GAACGGGTTC GGCAACCATG GGCTATGGTT GGCGTTTCTC GGGTTCATGG GGTTGCGGGC GGTGACGCTG GGGTGGGTGG GGTGGCGGTT GCAGCAGAAA GGTGAGTGGG TTCGGTAA
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Protein sequence | MSQLSADWRH RPTHHKVWAL AAPMILSNIS VPLVALVDST VIGHLPHAHQ LGAVAVGATL FTFMVGLMGF LRMGSTGFAA QAAGRGDGAA LRQVLVQGLL LAVGFALMIG LLALPFSQLA LHAMQPSAAL QQSTEDFFHT RLLGLPAALA SYALVGWFLG TQNARAPLAI LLTTNLLNIV LNLWFVLGLD WGVLGSARAS VIAEWSAALL GLALTRPALR AYPGQIAWAA LKRWQAWRPL LAVNRDIFLR SLALQLVFLL ITVQGARLGE ATVAANALLL NGLLLTAYAL DGLAHAVEAL CGHAIGARDR DTLRRSLVVA CGWSLITSLG FAGLFLLGGH LFIDLQTDIE SVRNAAYPYL PYLAVLPLIA VWSYLLDGLF IGATRAREMR NAMVVSVLIA LPVAVAMNGF GNHGLWLAFL GFMGLRAVTL GWVGWRLQQK GEWVR
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