Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0571 |
Symbol | |
ID | 5868317 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 643437 |
End bp | 645323 |
Gene Length | 1887 bp |
Protein Length | 628 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641545659 |
Product | TonB-dependent receptor plug |
Protein accession | YP_001666818 |
Protein GI | 167031587 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | [TIGR01779] TonB-dependent vitamin B12 receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.487741 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTACTGC CCATGAAAAC CCCAACCTTC GCCACCCTGC TCTGCCTCCC TCTTCCGCTG CTGGCCACTG AGCGCGACGA CGCCCTCAAG CTCCCCGACG TATTGATCAG CGCCAGCCGC CAAGTCGAAT CGCGCACCGC TACCAGCGCC GCCAACACCG TCTTCACCCG CACCGACATC GACCGCCTGC AACCCACCAG CGTCACCGAC CTGCTCACCC GCGTGCCCGG CGTGCAGGTG GCACCTACCG GTGGCCGTGG CAGCCTGCCT GGCATCTTCA TTCGCGGCAC CAAGGCAGCA CAAAGCCTGG TGCTGGTCGA TGGCGTGCGC ATCGCCAACG CCACCTCCGG CGACAGCGGC CTGCAGTTTC TCGACGTCGA CCAGATCGAG CGCATCGAAG TGCTACGCGG CTCGCGCTCG GCGGTGTACG GCAGCGATGC CATTGGCGGT GTGATCCAGA TTTTCACCCG CCGTAGCAAT GGCCCCGGCC TGCAGCCGCG CCTGCGCATG GCCGCTGGCA GCAACCAGAC CTTTCAACGC AGCCTGGGGC TTTCTGGCGG CAACGATGCG ACCCGCTTCA ACCTGGGCGC CAGCCTGGAT GAAACTGCCG GCATCGACTC GACCGGGCCG TCCTTCGACA GCGATGGCGA CCACGACGCC TACCGCAACC GATCGCTCAA CCTGAGCCTG AGCCATACGT TCAACGAACG TTTCGAGGCA GGTGTAAACC TGCTCGACAG CCGCGGGCGC AGTGAATACG ACAATCCGTA CGGGCGACTC GATGAAGATA CCTGGCTGAG TTATCCACAA CAGCCCTACA CCGATTTCAG CGTCAGCAGC CTGGGCGGCT GGTTCGATGC CCAACTCAAC GACGCCTGGC ACTCGAGGCT GGAACTGGGC CACAGCGAAA ACCGCGACGA CAAACGCGAC AAACTCAGCG ACCAGCGCTT CATTTACAAC ACCTATCGTG ATCAGGTCAC CTGGCAGAAC GATCTCGCCT TCGACGACCA AAACCAACTG ATGCTCGGTG GCGATTGGTA CGAGGAACGC TTCCATGGCA CGGCGAACTT CAGCGAAGAC AGCCGCTGGA ACCGCGCCGC CTTCGCCCAG TACCGTTTTA CCGGGGAACA CTTCTCGAGC GAGCTCGGCG TACGTCACGA CCGCAACCAA CAGTACGGCG ACCAGACCAC TTGGAACGCC AGCCTTACCC TTCCATTGAA TTCCCGCAAC GACCTACTGG CGTCTTACAG CGAAGGGTTT CGCGCCCCCA CTTTCAATGA CCTCTACGAC GTACAGTACG GTAACCCGGA CCTGCGCCCC GAGCACTCGA AGAGTTACGA GCTGCAATGG CGCAGCCAAC TGGCCAGCCA TACCCGACTG GAAGCCTCGC TGTATCGCAC CGACCTACGC GATGCGATCA ACTACGACCC AACGCTCAGG CGACCCGGCA ATGTCGACAA TGCACGCATC AATGGCTTCG AGTTGTCGTT GCTGCAGGAG TGGGCTGGCT GGACCTCTCA GTTGGGGGTG AGCATGATTG ATCCCCGAGA CCGCGAAAGC GGACATACCC TGCAGCGACG CGCCCGTCGC ACGTTGAACC TTGACCTGGA TCGTCAGTTC GAACGCTTCA GCGTGGGCGC GAGCTGGCAG GCTGTCAGCG GCAGCTACGA CGATCCATCG AACAATGAGC ACATAGGTGG CTATGGACTT GTCGGCCTAC GAGGCGGCAT GCGCCTGACG ACGGATGTAG AGCTTGAACT GAAGCTCGAC AACCTGCTGG ACAAACAGTA CAGCCGAGCC ATGTACAGCT TCGATGGCAG CCAGTACGGC TACCGCGAAG AAGGCCGCAC GCTGCTGTTC AGCGTTACCT GGACACCGGT GCTTTAG
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Protein sequence | MVLPMKTPTF ATLLCLPLPL LATERDDALK LPDVLISASR QVESRTATSA ANTVFTRTDI DRLQPTSVTD LLTRVPGVQV APTGGRGSLP GIFIRGTKAA QSLVLVDGVR IANATSGDSG LQFLDVDQIE RIEVLRGSRS AVYGSDAIGG VIQIFTRRSN GPGLQPRLRM AAGSNQTFQR SLGLSGGNDA TRFNLGASLD ETAGIDSTGP SFDSDGDHDA YRNRSLNLSL SHTFNERFEA GVNLLDSRGR SEYDNPYGRL DEDTWLSYPQ QPYTDFSVSS LGGWFDAQLN DAWHSRLELG HSENRDDKRD KLSDQRFIYN TYRDQVTWQN DLAFDDQNQL MLGGDWYEER FHGTANFSED SRWNRAAFAQ YRFTGEHFSS ELGVRHDRNQ QYGDQTTWNA SLTLPLNSRN DLLASYSEGF RAPTFNDLYD VQYGNPDLRP EHSKSYELQW RSQLASHTRL EASLYRTDLR DAINYDPTLR RPGNVDNARI NGFELSLLQE WAGWTSQLGV SMIDPRDRES GHTLQRRARR TLNLDLDRQF ERFSVGASWQ AVSGSYDDPS NNEHIGGYGL VGLRGGMRLT TDVELELKLD NLLDKQYSRA MYSFDGSQYG YREEGRTLLF SVTWTPVL
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