| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0560 |
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| Symbol | |
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| ID | 5868306 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 635223 |
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| End bp | 636353 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641545648 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_001666807 |
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| Protein GI | 167031576 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 50 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAGCC AAGCTGCCGT CCTCGACGCC CATTACATGG CCCGCGCGCT GGAGCTGGCG
CGCAAAGGCC TGTACACCAC TCACCCGAAC CCGCGCGTGG GCTGCGTGAT CGTGCGCGAT
GGCGAAGTGG TCGGTGAAGG CTGGCACGTG CGTGCCGGCG AGCCGCATGC CGAAGTGCAC
GCCCTGCGCC AGGCTGGTGA GCGCGCCATT GGCGCCTGTG CCTACGTCAC CCTTGAACCG
TGCAGCCATC ATGGCCGCAC GCCGCCGTGC GCCGAAGCAC TGGTCAAGGC CGGTGTGGCG
CGAGTGGTGG CGGCCATGCA GGACCCCAAC CCGCAAGTGG CAGGCCAGGG CTTGCAGCGC
TTGGCCGAGG CAGGCATTGA AGTCGCCAGC GGCGTGCTCG AAACCGAAGC CCGCGCACTG
AACCCGGGCT TCCTCAAGCG CATGGAGCAC GGCCTGCCGT TCGTCCGCGC CAAGCTGGCC
ATGAGCCTGG ATGGCCGCAC CGCGATGGCC AGTGGCGAAA GCCAGTGGAT CACCGGCCCG
GCTGCCCGTT CGGCGGTGCA GCGCTTGCGC GCCCGTTCCA GCGTGGTGCT GACCAGCGCT
GCCAGTGTGC TGGCCGACAA TGCACGAATG ACCGTGCGTG GCACCGAGCT GGGCCTGGAT
GCCGAAACCA CCGCCCTGGC ACTCAGCCGT ACACCGCTGA GGGTGCTGGT CGATAGTCGC
CTGCGCCTGC CGCTGGATGC GGCTTTCTTC CAAGCCGGGC CGGCGCTGGT GGTGGCTGCT
GTCGCAGATG ACCCGCGTTA TGCCGCTGCC GGCCACGAGT TGCTCAGCCT GCCGGGTGAC
AATGGCCAGG TCGACTTGCC GGCGCTGCTG CAAGCCCTGG CGGCCCGAGG TGTCAACGAA
ATCCTGCTGG AAGCCGGTGC CGGCCTGGTC GGCGCCTTTG CCCAGCAAGG CCTTGTCGAT
GAGTACCAGC TGTTTGTCGC CGGCACCTTC CTTGGCTCCC AGGCCCGGCC GCTGCTGGAC
TGGCCGCTGG GCAAGATGAG CGAGGCACCA AGGCTGAAAA TTACCGAAAT GCGCGCAGTG
GGCGATGACT GGCGGGTCAC GGCCATCCCC TTGCCGGCGC CCGGCGTATA A
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| Protein sequence | MPSQAAVLDA HYMARALELA RKGLYTTHPN PRVGCVIVRD GEVVGEGWHV RAGEPHAEVH
ALRQAGERAI GACAYVTLEP CSHHGRTPPC AEALVKAGVA RVVAAMQDPN PQVAGQGLQR
LAEAGIEVAS GVLETEARAL NPGFLKRMEH GLPFVRAKLA MSLDGRTAMA SGESQWITGP
AARSAVQRLR ARSSVVLTSA ASVLADNARM TVRGTELGLD AETTALALSR TPLRVLVDSR
LRLPLDAAFF QAGPALVVAA VADDPRYAAA GHELLSLPGD NGQVDLPALL QALAARGVNE
ILLEAGAGLV GAFAQQGLVD EYQLFVAGTF LGSQARPLLD WPLGKMSEAP RLKITEMRAV
GDDWRVTAIP LPAPGV
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