Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0490 |
Symbol | rpsC |
ID | 5868236 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 571806 |
End bp | 572492 |
Gene Length | 687 bp |
Protein Length | 228 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 641545578 |
Product | 30S ribosomal protein S3 |
Protein accession | YP_001666737 |
Protein GI | 167031506 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0092] Ribosomal protein S3 |
TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.208972 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGTCAGA AAGTACATCC CACTGGCATT CGCCTGGGAA TCGTCAAGGA GCACACCTCC GTCTGGTACG CAGACGGTGC TACTTACGCA GATTACCTGT TGAAGGATCT GAAAACGCGT GAGTACCTCC AAGACAAACT AAAAAGCGCG TCCGTAAGCC GTATCGATAT TCATCGTCCG GCTCAAACTG CACGCATCAC CATCCACACC GCTCGTCCCG GTATCGTTAT CGGTAAGAAA GGTGAAGATG TCGAGAAGCT GCGTCAGGAC CTGACCAAGC AGATGGGTGT GCCTGTGCAC ATCAACATCG AAGAGATCCG CAAGCCGGAA CTCGACGCTA TGCTGGTTGC GCAGAGCGTA GCTCAGCAGC TGGAACGCCG CGTAATGTTC CGTCGCGCCA TGAAGCGCGC AGTACAGAAC GCCATGCGTA TTGGTGCCAA GGGCATCAAG ATCCAGGTGA GCGGTCGTCT CGGCGGTGCT GAGATTGCTC GTACCGAGTG GTATCGCGAA GGTCGTGTGC CTCTGCACAC CCTGCGTGCC GATATCGACT ACAACACCTA CGAAGCTCAC ACCACTTACG GTGTGATCGG TGTGAAGGTT TGGATCTTCA AAGGCGAAGT TATTGGTGGT CGCCAAGAAG AGCTGAAACC ACAAGCACCA GCGCCTCGTA AAAAAGCTGC TAAGTAA
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Protein sequence | MGQKVHPTGI RLGIVKEHTS VWYADGATYA DYLLKDLKTR EYLQDKLKSA SVSRIDIHRP AQTARITIHT ARPGIVIGKK GEDVEKLRQD LTKQMGVPVH INIEEIRKPE LDAMLVAQSV AQQLERRVMF RRAMKRAVQN AMRIGAKGIK IQVSGRLGGA EIARTEWYRE GRVPLHTLRA DIDYNTYEAH TTYGVIGVKV WIFKGEVIGG RQEELKPQAP APRKKAAK
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