| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0449 |
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| Symbol | |
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| ID | 5868188 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 525019 |
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| End bp | 526899 |
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| Gene Length | 1881 bp |
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| Protein Length | 626 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641545530 |
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| Product | outer membrane autotransporter |
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| Protein accession | YP_001666696 |
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| Protein GI | 167031465 |
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| COG category | [I] Lipid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG3240] Phospholipase/lecithinase/hemolysin |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.616315 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.432339 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAAAAG CCCCGTTATT GCGCTTTACT CTCGCTTCAC TGGCCTTAGC TTGCAGCCAG
GCATTCGCTG CCCCCTCGCC CTATTCCACC TTGATCGTGT TTGGTGACAG CCTCAGTGAC
GCCGGGCAGT TCGGCGGCAT GCGCTTTACC AACCGCGATG CCGATGGCAA TTATGCCCCC
GTGTCGCCAA TGATCCTGGG CGGACGGCTG GGGGTGAGCC CGATCGAGCT GGGTCCTTCT
ACCTCGCCTC TCAACCCGGC ATTAGGGCTT CCCGACGGCA ACAACTGGGC AGTCGGCGGC
TACACGACCC AACAGATCCT GGACTCGATC ACCAGCACAT CCGAAACAGT CATCCCACCG
GGGCGCACCG GCGCCGGGCA GGTACTGCGT GAAAAGCCGG GCTACCTGGC CAATGGCCTG
CGTGCCGACC CCAACGCGCT GTACTACCTG ACCGGCGGCG GCAATGACTT CCTGCAGGGC
CTGGTCAACA GCCCGGCCGA TGCCATCGCC GCTGGCGCCC GCTTGGCTGC CAGCGCCCAG
GCCCTGCAAC AAGGCGGCGC CCGCTACATC ATGGTCTGGC TGCTGCCCGA CCTCGGCCAA
ACACCGAACT TCAGTGGTAC GCCACAACAA AACCCGCTGT CATTGCTGTC TGGCGCCTTC
AACCAGTCGC TGCTCAGCCG ACTGGGGCAG ATCGATGCCG AGATCATCCC GCTGAACGTT
CCCTTGCTGC TGAGCGAGGC ATTGGCCAGC CCCAACCAGT TCGGCCTCGC CAGCGATCAG
AACCTGGTCG GTACTTGCTA CAGCGGCGAA GGTTGTGTGG CCAACCCGGT ATATGGCATC
ACCGGCACCA CCCCCGACCC AACCAAACTA CTGTTCAACG ACTCGGTGCA CCCGACCATC
GCGGGCCAGC AACTGATTGC CGACTACGCC TATTCGATCA TTTCCGCACC TTGGGAGCTG
ACCCTGCTGC CAGAAATGGC CCATGCCAGC CTGCGCGCCC ACCAGGATGA ATTGCGCAAC
CAGTGGCAGA CACCCTGGCA AGCCGTAGGT CAGTGGCAAG CCTTTGTCGC CACTGGCGCC
CAGGACCTGG ACTTCGACGG CCAGCACAGC GCGGCCAGCG GCGATGGACG TGGCTACAAC
CTGACTGTGG GCGGCAGCTA TCGCCTGAAC GACGCCTGGC GCGTGGGCCT CGCCGGTGGT
GCATACCGAC AGAAGCTGGA AGTCGGCGAC CAAGACTCGG ACTACAAACT GAACAGCTAC
CTGGCCAGTG CCTTTGCCCA ATACCGCCAG GACCGCTGGT GGGCCGATGC CGCGCTGACC
GCCGGGCACC TGGACTACAG TGACCTGAAA CGCACCTTCG CCCTGGGCGT GAATGGCCGT
AGCGAAAAGG GCGACACCGA CGGCGAGGCC TGGGCGATGT CCGGGCGCCT GGGCTACAAC
CTGGCGGCCG ACAGCAGCGA CTGGCAGCTG GCACCCTTCA TCAGTGCCGA CTATGCGCGG
GTGAAAGTGG ATGGCTACGA CGAGAAAAGC GGGCGCTCGA CGGCACTGGG CTTCGATGAC
CAGGAACGCA CGTCACGTCG GCTAGGCGTG GGGTTGCTGG GTAGTGTGCA GGTAATGCCA
AGTACCCGGT TGTTCGCCGA GGTGGCGCAG GAACACGAGT TCGAGGACGA CCAGCAGGAT
GTGACGATGC ACCTGACCCG CTTGCCGGCC AATGACTTCA CCCTGACCGG GTATACGCCA
CACAGCGACC TGACCCGAGC GAGCCTTGGG GTGAGCCATG AACTGGTGGC GGGGGTGCAT
GTGCGTGGGA ACTACAACTG GCGCAAGAGT GATGAGTTGA CGCAGCAGGG GGTGAGCCTG
GGGGTGAGCG TGGACTTCTG A
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| Protein sequence | MRKAPLLRFT LASLALACSQ AFAAPSPYST LIVFGDSLSD AGQFGGMRFT NRDADGNYAP
VSPMILGGRL GVSPIELGPS TSPLNPALGL PDGNNWAVGG YTTQQILDSI TSTSETVIPP
GRTGAGQVLR EKPGYLANGL RADPNALYYL TGGGNDFLQG LVNSPADAIA AGARLAASAQ
ALQQGGARYI MVWLLPDLGQ TPNFSGTPQQ NPLSLLSGAF NQSLLSRLGQ IDAEIIPLNV
PLLLSEALAS PNQFGLASDQ NLVGTCYSGE GCVANPVYGI TGTTPDPTKL LFNDSVHPTI
AGQQLIADYA YSIISAPWEL TLLPEMAHAS LRAHQDELRN QWQTPWQAVG QWQAFVATGA
QDLDFDGQHS AASGDGRGYN LTVGGSYRLN DAWRVGLAGG AYRQKLEVGD QDSDYKLNSY
LASAFAQYRQ DRWWADAALT AGHLDYSDLK RTFALGVNGR SEKGDTDGEA WAMSGRLGYN
LAADSSDWQL APFISADYAR VKVDGYDEKS GRSTALGFDD QERTSRRLGV GLLGSVQVMP
STRLFAEVAQ EHEFEDDQQD VTMHLTRLPA NDFTLTGYTP HSDLTRASLG VSHELVAGVH
VRGNYNWRKS DELTQQGVSL GVSVDF
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