| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0443 |
|---|
| Symbol | |
|---|
| ID | 5868182 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 518604 |
|---|
| End bp | 519638 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641545524 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001666690 |
|---|
| Protein GI | 167031459 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.841925 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAAGC AGTTGAAACT GACCGCCCTG GCCCTGGGGC TGTTCGCCGC TGGCCAGGCC
ATGGCCGCGG ACCTCACCGT GATCTCGTTC GGGGGCGCCA ACAAGGCTGC CCAGGTCAAA
GCGTTCTACG AGCCATGGGA AAAGGCGGGT AATGGCAAGA TCGTCGCAGG CGAGTACAAC
GGCGAAATGG CCAAGGTCAA GGCGATGGTG GACACCAAGA GCGTGTCGTG GAACCTGGTA
GAGGTCGAGT CGCCGGAGTT GGCGCGCGGT TGCGATGAGG GCATGTTCGA AGAACTCGAC
CCGGCACTGT TCGGCGATGA CGCCGACTAT GTACCTGGGG CCATCCAGCC TTGCGGCGTA
GGCTTCTTCG TATGGTCCAC GGTCATGGCC TACAACGCCG ACAAGCTCAA GACCGCCCCC
ACCAGCTGGG CCGACTTCTG GGACACCAAG CAGTTCCCGG GCAAGCGTGG CCTGCGCAAG
GGCGCCAAGT ACACGATGGA ATTCGCACTG ATGGCCGATG GCGTTGCGCC CAAGGACGTC
TACAAAGTGC TGGCCACCAA GGAAGGCCAG GACCGCGCCT TCAAGAAGCT CGATGAACTC
AAGCCCAACA TCCAGTGGTG GGAAGCTGGC GCGCAGCCAC CGCAGTTCCT GGCCTCCGGT
GACGTGGTCA TGAGTTCTGC CTACAACGGC CGTATTGCCG CTGTGCAGAA GGAAAGCAAC
CTCAAAGTGG TGTGGAACGG CGGTATCTAC GACTTTGATG CCTGGGCGAT TCCTAAAGGT
GCCAAGAACG CCGAAGAAGC CAAGAAATTC ATTGCCTATA GCGTCAAACC CGAGCAGCAG
AAGATCTACT CCGAGAACAT CGCCTACGGC CCGGCCAACG CCAAGGCCGT GAGCTTGCTG
TCGGAAGACG TGAAGAAGGA CATGCCGACC ACGCCTGAAA ACATCGCCAA CCAGGTGCAG
ATCGATGTGG CCTTCTGGGC TGACAACAGC GAGCAGCTGG AGCAACGCTT CAACGCCTGG
GCGGCGAAGA AGTAA
|
|---|
| Protein sequence | MRKQLKLTAL ALGLFAAGQA MAADLTVISF GGANKAAQVK AFYEPWEKAG NGKIVAGEYN
GEMAKVKAMV DTKSVSWNLV EVESPELARG CDEGMFEELD PALFGDDADY VPGAIQPCGV
GFFVWSTVMA YNADKLKTAP TSWADFWDTK QFPGKRGLRK GAKYTMEFAL MADGVAPKDV
YKVLATKEGQ DRAFKKLDEL KPNIQWWEAG AQPPQFLASG DVVMSSAYNG RIAAVQKESN
LKVVWNGGIY DFDAWAIPKG AKNAEEAKKF IAYSVKPEQQ KIYSENIAYG PANAKAVSLL
SEDVKKDMPT TPENIANQVQ IDVAFWADNS EQLEQRFNAW AAKK
|
|---|
| |