Gene PputGB1_0425 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_0425 
Symbolcca 
ID5868164 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp496355 
End bp497461 
Gene Length1107 bp 
Protein Length368 aa 
Translation table11 
GC content64% 
IMG OID641545506 
Productmultifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 
Protein accessionYP_001666672 
Protein GI167031441 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0617] tRNA nucleotidyltransferase/poly(A) polymerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.676476 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACATCT ACAAAGTCGG CGGCGCCGTG CGCGACCGCC TGCTCGGCCG CCCGGTCAGC 
GATATCGACT GGCTGGTGGT TGGCGCTACC GTCGAAGAAA TGCTTGCCAA GGGCTACCGG
CCGGTCGGTG CCGATTTCCC GGTGTTCCTG CACCCGAAAA CCGGCGAGGA GTACGCCCTG
GCGCGCACCG AGCGCAAGAG TGGGCGCGGC TACGGTGGGT TTACCTTTCA TGCCAGCCCC
GACGTCACCC TGGAAGAAGA CCTGATCCGC CGCGACCTCA CCATCAATGC GATGGCTGAA
GATGAAGCGG GCACGGTGTA CGACCCCTAC CATGGCAAGG ACGATCTCGA TCAACGCCTT
TTGCGCCATG TTTCCCCGGC ATTCGCCGAA GATCCTCTGC GCGTACTACG CGTCGCGCGC
TTTGCTGCTC GTTATGCGCC TCTGGGTTTC CGGGTTGCCG ACGAGACCCT GGAACTGATG
CGCCAGATCA GTGCCTCAGG CGAACTGCAG GCACTGACCG CCGAGCGCAG CTGGAAGGAA
ATCGAGCGCG CGCTGATGGA GGCTCGCCCC CAGGTGTTCT TCCAAGTGCT GGGCGCTTGC
GGCGCCCTGC ACGAGCTACT GCCTGAGCTT GTCGACGATA CACAGGCCCT GGCGGCGCTG
GAGCAAGCCG CAGCGCACGA ACAGCCGCTG CACGTGCGCT GGGCCTGCCT GTTGCGAGGG
CTGGCACCGG CGCCGATCAA AACCGTCAAC CAGCGCCTCA AGGCACCACG GGAATGCCAG
GAACTGGCCT TACTTACCGG AGAGTGCCTG GCGCAGGGTA ACCAGGCGCA GGAGCTACCA
GCCACGGCAC TGCTGGAGCT GTTGCAGAAA TTCGATGTGT ACCGGCGACC GCAGCGGTTC
GAGGATTTCA TTGTCGTGTG CGAGATGGCG GCGCTGGGCG ATGGCAAGTC GAGTTATCCA
CAAGCCGATT ATCTGCGTGG CGCAGCAGCA GCGGCGCGAG CGGTGGATGT GAAGCCGCTG
GTGCAAGCCG GGCTGACGGG CCAGGCGCTG GGCGAAGCGC TCAAGCGTGA GCGGCTGAAG
GCTGTCGAGG CTTACAAACG CAGTTGA
 
Protein sequence
MHIYKVGGAV RDRLLGRPVS DIDWLVVGAT VEEMLAKGYR PVGADFPVFL HPKTGEEYAL 
ARTERKSGRG YGGFTFHASP DVTLEEDLIR RDLTINAMAE DEAGTVYDPY HGKDDLDQRL
LRHVSPAFAE DPLRVLRVAR FAARYAPLGF RVADETLELM RQISASGELQ ALTAERSWKE
IERALMEARP QVFFQVLGAC GALHELLPEL VDDTQALAAL EQAAAHEQPL HVRWACLLRG
LAPAPIKTVN QRLKAPRECQ ELALLTGECL AQGNQAQELP ATALLELLQK FDVYRRPQRF
EDFIVVCEMA ALGDGKSSYP QADYLRGAAA AARAVDVKPL VQAGLTGQAL GEALKRERLK
AVEAYKRS