| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0418 |
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| Symbol | |
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| ID | 5868157 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 489069 |
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| End bp | 490919 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641545499 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001666665 |
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| Protein GI | 167031434 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGGAA AAGCGCAACA GCAGTCTCGT ATCAAAGAGT TGATCACCCG CGGTCGTGAG
CAGGGCTACC TGACTTACGC GGAGGTCAAC GACCACCTGC CTGAGGATAT TTCAGATCCG
GAACAGGTGG AAGACATCAT CCGCATGATC AACGACATGG GGATCAACGT ATTCGAGAGT
GCTCCGGATG CGGATGCCCT TCTGTTGGCG GAAGCCGACA CCGACGAAGC CGCGGCCGAA
GAAGCCGCTG CTGCGTTGGC GGCCGTTGAA ACCGATATCG GCCGCACGAC CGACCCGGTG
CGCATGTACA TGCGCGAAAT GGGTACTGTC GAGCTGCTGA CCCGTGAAGG CGAGATCGAA
ATCGCCAAGC GTATCGAGGA AGGCATTCGT GAAGTCATGG GCGCCATCGC CCACTTCCCG
GGCACTGTCG ATTACATTCT CGGCGAATAT GACCGCGTCA CCACCGAGGG TGGCCGCCTG
TCCGACGTTC TCAGCGGCTA CATCGACCCT GACGACAACA TTGCTGCGCC GACCGAAGAA
GTGCCGATCC CAGGCACCAA GGCCGCTGCT GCGAAGGAAG AGTCCGACGA CGAAGAGGAA
GAGTCCGAAA GCGGTGACGA CGAGGAAGAG GCCGAGAGCG GCCCGGACCC GGTAGTCGCG
GCTCAACGCT TCGGTGCGGT ATCCGATCAA CTTCAGGCAA CCTCCAAGGT CCTGAAGAAA
AACGGTCGTG GCCACAAGGA AAGCATCGAG GCCCTTCAGG CCCTGGCTGA CCTGTTCATG
CCGATCAAGC TTGTACCGAA GCAGTTCGAG GTACTGGTCG AGCGTGTACG TGACGCCCTG
AACCGTCTGC GCCAGCAAGA ACGCGCCATC ATGCAGCTGT GCGTCCGTGA CGCCCGCATG
CCGCGTGCCG ACTTCCTGCG CATGTTCCCG AGCAACGAAA CCGACCAGAC CTGGAGCGGT
GACCTGGCCA AGCGCAACAC CAAGTGGGCT GCTGCCCTGG GTGAAAAGGA CGCAGCCATC
GTCGCTTGCC AGCAGAAACT GATCGACCTT GAGACCGAAA CCGGCTTGAC CGTTGCCGAG
ATCAAGGAAA TCAACCGTCG CATGTCGATC GGTGAAGCCA AGGCCCGCCG CGCCAAGAAA
GAAATGGTCG AGGCGAACCT GCGTCTGGTG ATCTCCATCG CCAAAAAGTA CACCAACCGT
GGCCTGCAGT TCCTCGACCT GATCCAGGAA GGCAACATCG GCTTGATGAA AGCGGTGGAC
AAGTTCGAAT ACCGCCGCGG CTACAAGTTC TCGACCTATG CCACCTGGTG GATCCGTCAG
GCGATCACCC GCTCGATCGC CGACCAGGCA CGCACCATCC GTATTCCGGT GCACATGATC
GAGACGATCA ACAAGCTCAA CCGTATTTCC CGCCAGATGC TGCAGGAAAT GGGTCGCGAA
CCGACCCCGG AAGAGCTGGG CGAGCGCATG GAAATGCCTG AGGACAAGAT CCGCAAGGTA
CTGAAGATCG CCAAAGAGCC GATCTCCATG GAAACCCCGA TCGGTGACGA CGAAGATTCG
CACCTGGGCG ACTTCATCGA GGACTCGACC ATGCAGTCCC CGATTGACGT GGCCACGGTC
GAAAGCCTCA AGGAAGCCAC CCGCGACGTG CTCTCGGGCC TGACCGCACG CGAAGCCAAG
GTGCTGCGCA TGCGTTTCGG TATCGACATG AACACCGACC ACACCCTCGA AGAGGTGGGC
AAGCAGTTTG ACGTAACCCG TGAGCGGATT CGTCAGATCG AAGCGAAGGC GTTGCGCAAA
CTGCGCCACC CGACTCGCAG CGAGCACCTG CGCTCCTTCC TCGACGAGTG A
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| Protein sequence | MSGKAQQQSR IKELITRGRE QGYLTYAEVN DHLPEDISDP EQVEDIIRMI NDMGINVFES
APDADALLLA EADTDEAAAE EAAAALAAVE TDIGRTTDPV RMYMREMGTV ELLTREGEIE
IAKRIEEGIR EVMGAIAHFP GTVDYILGEY DRVTTEGGRL SDVLSGYIDP DDNIAAPTEE
VPIPGTKAAA AKEESDDEEE ESESGDDEEE AESGPDPVVA AQRFGAVSDQ LQATSKVLKK
NGRGHKESIE ALQALADLFM PIKLVPKQFE VLVERVRDAL NRLRQQERAI MQLCVRDARM
PRADFLRMFP SNETDQTWSG DLAKRNTKWA AALGEKDAAI VACQQKLIDL ETETGLTVAE
IKEINRRMSI GEAKARRAKK EMVEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD
KFEYRRGYKF STYATWWIRQ AITRSIADQA RTIRIPVHMI ETINKLNRIS RQMLQEMGRE
PTPEELGERM EMPEDKIRKV LKIAKEPISM ETPIGDDEDS HLGDFIEDST MQSPIDVATV
ESLKEATRDV LSGLTAREAK VLRMRFGIDM NTDHTLEEVG KQFDVTRERI RQIEAKALRK
LRHPTRSEHL RSFLDE
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