| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0417 |
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| Symbol | |
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| ID | 5868156 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 485198 |
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| End bp | 488941 |
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| Gene Length | 3744 bp |
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| Protein Length | 1247 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641545498 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001666664 |
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| Protein GI | 167031433 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCTTGA AGCCGGCCAT TCTGTTGCTG CTCCTGATTT TATGGAACAC AACGGCCGGC
GCCCTGACCC TGACAGATGA GGAGAAAGCC TGGCTGGCTG CTCACCCGCA GTTGAGCCTG
GGCGTAGACG CCTCTTGGCC ACCGTTCGAG TTTCGCGACC AGGAGGGCCG GTACCAGGGA
TTGGCCGCCG ATTACATCGC CACGATCCAG CAGCGCCTGG GCGTGACACT CAAGCCGGTC
GAACCCAGCA GCTGGACCGA GGTACTGGCA CAGGCACGGG AAAGCCGCAT CGACCTGCTG
CCCGGCATCA TGTCCACCCC CGAACGCCAG GGCTATCTGG CCTTCACCCG CCCGTACCTC
GACTTCCCCA TTGTCATCCT GGCCCACAAA GGCGGCGCAC AACCACGCAA GCTGGATGAC
CTGTACGGCC TGAAAATCGC CGTGGTCGAG AACTACGCCC CGCACGAGCT GCTGCGCACC
CACCACCCCG ACCTCAACCT GGTGGCGCTG CCCAATGTCA GCTCCACGCT GCAGGCCCTG
GCCACCGACC AGGTGGACGC CGTGGTCGGC GACCTGGCTT CCAGCATCTG GAGCCTGCGC
CAGCTCAAAC TCGACGGCCT GTACGTCAGC GGCGAAACAC CCTACCGCTA CCAGCTGGCG
ATGGCCGTCC CCCGCGACAA GGCCGTGCTG GTCGGTATTC TCGACAAAGT GATGGCCGAC
ATGAGCAGCA GCGAAATCAG CCAGATCCAG CAGCGCTGGG TGGGCAATGT AGTCGACCAG
CGGATGTTCT GGTCTGACCT GCTGGTATAT GGCTTGCCAA CGGTGCTGTT GCTGATGGCC
GTGCTGGCCG TGGTCATCCG CATCAACCGC CGCCTCAGCT CGGAAATTTC CAGGCGCATC
GCCCTGGAGC AAGAGCTGCG CAGCAGCGAA TACCACTACC GAGGCCTTGT AGAGAGCCTG
TCAGCCATCG CCTGGGAAGC CGATGCCAAC GACTTCACCT ACAGCTACGT TTCACCGCAT
GCCGAAGACC TGCTCGGCTA CCCCTTGAGT GACTGGCTCC GGCCCGGCTT CTGGCGCAGC
ATCCTGCACC CAGAGGACGC CCTCTGGGCC CAGGCGTACT GCGACAGCGA AACCGCAGCC
GGACGCGACC ACAGCCTGGA CTACCGAGTG ATCCGCGCCG ACGGCCAGCC CCTTTGGGTA
CGCAACATCG TCAGCATGAT CGAACACGGC CACCAACCGG TGATGCGCGG CCTGATGATC
GACATCAGCG AAACCAAGCA CACCGAGGAC GCCCTGCGCC TGTCCGAGCA GAAGTTCGCC
TCGGTGTTCC AGCAATGCCC AGACATCCTG CTGATCGCCC GCCACAGCGA TGGCTGCCTT
CTGGAGGTGA ACGAAGCCTT CGAAGAGCAG ATCGGCCTGA CCCAAAGCCA GGTGATTGGC
CGTACCGCCA CCGACCTGAA CCTGTGGGGC GTCGAAGGCA GCGGCCTACG AGTGCTCGAA
CACCTGCACC AGGGCGGCAT CCGTAACCTG GAAATGAGTT TCCGCCGCAG CAATGGCCAG
CTGTTCACCG GCCTGACCTC GGCCGAAACC TTCGAACTCG ACGGCACCCC CGCGCTGGTA
GTGGCGGTGC GCGACATCAG CCAGCTCAAG GAAACCCAGC AACAGTTGCA AACCTCGGAA
GAGAAATTCG CCAAAGCCTT CCACGCCTCC CCCGACGGCC TGCTGCTGTC GCGCCAGAGC
GACGGTCTGC TGCTGGAGGT GAACGAGGGC TTCTGCCGCC TGACCGGCTA TGACCTCAAC
CCGACCATCG ACCAGACCTC GCTGGACCTG GGCATCTGGG TAGACCTCAA CGAGCGCAAG
CGCCTGGTCG AGCAGCTCAA CCGCGACGGC TTCGTGCGTG ATTTCACCTG CCACATCCGC
CGCAGCGACG GGCAGATCCG CCTTTGCGAG CTGTCCGCCC GGCCCCTGCC GATTACCGGC
GTCGACTGCA TGCTGACCAT CGCCCGCGAC ATCACCGAGC GCCACCTGAT GCAGGAAAAA
CTGCAGCTGG CCGCCACCGT GTTCGAGAAC ACTGCCGAAG GCGTACTGAT CACCGACATT
GACCAGCACA TCAGTGCTGT CAACCGCGCC TTCAGCGAAA TCACCGGCTA CAGCGAAATC
GAAGCCCTCG GCCAGACCCC GCGCCTGCTC GCGTCCGGCC AGCACGACAG CGCCTTCTAT
GCGGCCATGT GGCACCAGCT GACCGACGAA GGGCACTGGC AGGGCGAGAT CTACAACAAG
CGCAAGAACG GCGAGCTTTA CCCAAGCTGG CTGACCATCA GCGCCGTGCG CAACAGTGAA
CGCGAGATCA CTCACTTCGT GGCGGTTTTC GCAGACATCT CCAGCATCAA GCACGCCCAG
GCCAAACTCG ACTATCAGGC CCACCATGAC CCGCTGACCG GCTTGCCCAA CCGCGCCCTG
TTCGAGAACC GCCTGCAGGC TGTACTCACC TGCGCGCAAG TCTCCAACCG CCAGGGCGCG
GTACTGTTCC TCGACCTCGA CCGTTTCAAG CACATCAACG ACAGCCTCGG CCACCCAGTC
GGCGACCTGC TGCTTAAAGG CATCGCCCAG CGCCTGAAGG AGCAGGTGCG CGACGTCGAC
ACCGTGGCCC GACTGGGCGG CGACGAGTTC ATCATCCTGC TACCCGGCCT GCACAAGCCC
AGTGATGCCA GTACCATCGC CAACAAGCTG CTGGCCTGTT TCGCCGCGCC GTTCCAGGCC
GGTGAACACG AGTTCTTCAC CAGCGCCAGC ATCGGCATCA GCCTGTATCC ACAGGACGGC
ACCGACGTTG CCACACTGAT CCGCAACGCC GACGCCGCCA TGTACCGCTC CAAGGCCAAA
GGCCGCAACC GCGTCGAAGC GTACACCCGC GACCTCACCG CCCAGGCCAG CGAGCGCATC
GCCTTGGAGC ATGAACTGCG CCGCGCTGTC GAACGCAACG AAATGAGCCT GTGCTTCCAG
CCCAAGCTCA GCCTCAAGAC CCAGAAGCTG GTAGGCGCCG AGGCGCTGAT CCGCTGGAGC
CACCCAACCT TTGGGGAGGT GCCACCAGAG CACTTCATCC ACCTGGCGGA AGAGAATGGC
ACCATTCTCC AACTCGGTGA CTGGGTTCTG GAGCAAGCCT GCCGACAGAT GCAGGCCTGG
AAACAGCACT ATCAACCCTT CGGCCCGCTG TCGATCAACC TTGCCGGCGC CCAGCTGCGC
CACCCGCACC TGGCCCGGCG CATCGAACAG TTGCTAAAGC ACTACCAGCT AAAGGCCGGT
GACCTACAGC TGGAAATTAC CGAGAACTTC ATCATGAGCC AGGCAGAAGA GGCCCTGGCC
GTGCTGTACC AGTTGAAGAA ACTGGGCGTG CAACTGGCTA TCGATGACTT CGGCACCGGC
TATTCCTCGC TGAGCTACCT CAAACGCCTG CCGCTGGATA TTCTCAAGAT CGACAAGTCG
TTCATCCGCG GCCTGCCCGA CGACCCACAC GATGCCGCCA TCGCCCGCGC GATCATTGCC
CTTGGCCGCA GCATGCAGCT GACGATCATT GCCGAAGGCG TGGAAAACCA GGCCCAGCAG
CGTTTTCTGG CAGCGGAAGG GTGTGAGCAG ATCCAGGGCT ACATCGTCAG CCTGCCGCTG
CCACCAGACG AGTTCGCGGC CGCGTTCCTT CGCATAGCAC TATCAGATCT TTCAGATGGC
ACAGGTGCGA AACCCTCGTT ATAA
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| Protein sequence | MPLKPAILLL LLILWNTTAG ALTLTDEEKA WLAAHPQLSL GVDASWPPFE FRDQEGRYQG
LAADYIATIQ QRLGVTLKPV EPSSWTEVLA QARESRIDLL PGIMSTPERQ GYLAFTRPYL
DFPIVILAHK GGAQPRKLDD LYGLKIAVVE NYAPHELLRT HHPDLNLVAL PNVSSTLQAL
ATDQVDAVVG DLASSIWSLR QLKLDGLYVS GETPYRYQLA MAVPRDKAVL VGILDKVMAD
MSSSEISQIQ QRWVGNVVDQ RMFWSDLLVY GLPTVLLLMA VLAVVIRINR RLSSEISRRI
ALEQELRSSE YHYRGLVESL SAIAWEADAN DFTYSYVSPH AEDLLGYPLS DWLRPGFWRS
ILHPEDALWA QAYCDSETAA GRDHSLDYRV IRADGQPLWV RNIVSMIEHG HQPVMRGLMI
DISETKHTED ALRLSEQKFA SVFQQCPDIL LIARHSDGCL LEVNEAFEEQ IGLTQSQVIG
RTATDLNLWG VEGSGLRVLE HLHQGGIRNL EMSFRRSNGQ LFTGLTSAET FELDGTPALV
VAVRDISQLK ETQQQLQTSE EKFAKAFHAS PDGLLLSRQS DGLLLEVNEG FCRLTGYDLN
PTIDQTSLDL GIWVDLNERK RLVEQLNRDG FVRDFTCHIR RSDGQIRLCE LSARPLPITG
VDCMLTIARD ITERHLMQEK LQLAATVFEN TAEGVLITDI DQHISAVNRA FSEITGYSEI
EALGQTPRLL ASGQHDSAFY AAMWHQLTDE GHWQGEIYNK RKNGELYPSW LTISAVRNSE
REITHFVAVF ADISSIKHAQ AKLDYQAHHD PLTGLPNRAL FENRLQAVLT CAQVSNRQGA
VLFLDLDRFK HINDSLGHPV GDLLLKGIAQ RLKEQVRDVD TVARLGGDEF IILLPGLHKP
SDASTIANKL LACFAAPFQA GEHEFFTSAS IGISLYPQDG TDVATLIRNA DAAMYRSKAK
GRNRVEAYTR DLTAQASERI ALEHELRRAV ERNEMSLCFQ PKLSLKTQKL VGAEALIRWS
HPTFGEVPPE HFIHLAEENG TILQLGDWVL EQACRQMQAW KQHYQPFGPL SINLAGAQLR
HPHLARRIEQ LLKHYQLKAG DLQLEITENF IMSQAEEALA VLYQLKKLGV QLAIDDFGTG
YSSLSYLKRL PLDILKIDKS FIRGLPDDPH DAAIARAIIA LGRSMQLTII AEGVENQAQQ
RFLAAEGCEQ IQGYIVSLPL PPDEFAAAFL RIALSDLSDG TGAKPSL
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