Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0401 |
Symbol | |
ID | 5868139 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 468380 |
End bp | 469303 |
Gene Length | 924 bp |
Protein Length | 307 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641545481 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001666648 |
Protein GI | 167031417 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.709145 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATTTCC GCCAACTGCG TTATTTCGTC GCGGTGTATG AAGAAGGCCA CGTGGGCCGT GCCGCCGAAC GCCTGTCGCT GTCCCAGCCT GCGCTTTCCC AACAGATCCG TCAGCTGGAG CACAGCCTCG ACCTGAGCCT GTTCGAGCGC AGCAACAAGC GCCTGCTACC GACCCTGGCC GCCCACACCC TGTACAACCA TGCCTTGCCG TTGCTCGACG GCCTGCAGCG TGCTCACGAG GCCATGCGCA ATTTCAAAGG CCAGTCGCTG CGTACCTTGG CCATCGGTGT GCTGCAAACC GTGCGCCCCA GCCTGGTACC GCAGCTGCTT GAACGGCTGC GCAAGGCTCA GCCTCATCTG GTGGTGCAGA TTTACGAATT GTCAGGGCTG GAGATCGAGC GGCGCTTGCT CAACGGCAGC CTGGACATCG GTATCAGCTA CCTGCCGCCG CGCCAGCCAG GGCTGCATGG CCTGCTGCTG TACGAAGATG AGTTGCAACT GGTGATCCCC GATACCCACC CATTGAAGGA CTTCAAGAAG GTGTCCATCC GCCAGGCCGC CGAGCTGCCC ATGCTGATGT TGGGCGAGGA GTTCCAGATC CGACAGATCT GGCAGGCGCA GCTGGCCAGT CAGGGCCGAC GGCCGCAGGT ACAGGCCGAG ATGAACAACA TGGCGGGGAT TCTCGACAGC CTGGCGCACA CGGCGCTGGC CACTATTCTG CCGGGGCGGG CCAAGGAGGC CGCCGAAGAT GACCAGGGGC TGCTGTGGAA GCCGTTGAGC GAGCCGCGCG TGCCGCTGAA GGTTGGCCTG GTGTTCCGCG ATGCCCAGCG CCAGCAGGCC TCTGTGGAGT TGTTGCGCAC GCTGCTGGAG GAAGAGACCG ATGCCCGCCT TTTGGGGGCG TCACCGCTGG ATGTGCTGGC CTGA
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Protein sequence | MDFRQLRYFV AVYEEGHVGR AAERLSLSQP ALSQQIRQLE HSLDLSLFER SNKRLLPTLA AHTLYNHALP LLDGLQRAHE AMRNFKGQSL RTLAIGVLQT VRPSLVPQLL ERLRKAQPHL VVQIYELSGL EIERRLLNGS LDIGISYLPP RQPGLHGLLL YEDELQLVIP DTHPLKDFKK VSIRQAAELP MLMLGEEFQI RQIWQAQLAS QGRRPQVQAE MNNMAGILDS LAHTALATIL PGRAKEAAED DQGLLWKPLS EPRVPLKVGL VFRDAQRQQA SVELLRTLLE EETDARLLGA SPLDVLA
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