| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0396 |
|---|
| Symbol | bioD |
|---|
| ID | 5868134 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 461427 |
|---|
| End bp | 462107 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641545476 |
|---|
| Product | dithiobiotin synthetase |
|---|
| Protein accession | YP_001666643 |
|---|
| Protein GI | 167031412 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0132] Dethiobiotin synthetase |
|---|
| TIGRFAM ID | [TIGR00347] dethiobiotin synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.0704487 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.887363 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGG CCTATTTCAT TGCCGGCACC GACACCGATG TCGGCAAGAC CACCATCGCC
GCCGGGCTGT TGCATGCGGC GCGCTTGCAG GGCATGAGCA CGTTGGGCGC CAAGCCGGTG
GCCTCTGGCT GCACGATGAC GCCCAAAGGC TTGCGCAATA GCGATGCCCA GGCGCTGATC
GACGAAAGCA CGATCAAGTT GCCCTACGAG CAGGTCAACC CGTTTGCCTT CGAGCCTGCA
ATTGCCCCAC ATGTGGCCGC GCGCGAGGCG GGGGTGACGC TGGCGGTGCC AGAGCTGTTG
GCGGCTATGC GTAATGTGCT GCAACAGCAT GCCGATTTCA CCTTGGTGGA AGGGGCCGGT
GGCTGGCGCG TGCCGCTGTC GGGCCTGGAG AACCTGTCCG ACCTTGCCAT TGCCCTGCAG
TTGCCGGTGA TTCTGGTGGT AGGCGTGCGC TTGGGTTGCA TCAGCCATGC CTTGCTCAGC
GCCGAGGCCA TAGAACGTGA CGGGTTGCAG CTGGCGGGTT GGGTGGCAAA CATCATCGAG
CCGCGTACTT CACGGCTGGA AGAAAACCTG GCCAGTCTGG CTGAACGCTT GCCGGCGCCT
TGCCTGGGGC GGGTGCCCAA GTTGAAGCAG GCCAGCGCCG ATATGGTGGC TGAGCATTTG
CAGTTGGACC TGCTGGATTA G
|
|---|
| Protein sequence | MSQAYFIAGT DTDVGKTTIA AGLLHAARLQ GMSTLGAKPV ASGCTMTPKG LRNSDAQALI
DESTIKLPYE QVNPFAFEPA IAPHVAAREA GVTLAVPELL AAMRNVLQQH ADFTLVEGAG
GWRVPLSGLE NLSDLAIALQ LPVILVVGVR LGCISHALLS AEAIERDGLQ LAGWVANIIE
PRTSRLEENL ASLAERLPAP CLGRVPKLKQ ASADMVAEHL QLDLLD
|
|---|
| |