Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0378 |
Symbol | |
ID | 5868116 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 439949 |
End bp | 442381 |
Gene Length | 2433 bp |
Protein Length | 810 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641545458 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_001666625 |
Protein GI | 167031394 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 0.177868 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCCGTG CCGTAGATCG TATCCTGCGC CCCAGCCTGA TGGCCCTGGC CATCGCCGTG GCCGCACCGC TGGCCAGCAC TGCCTTGTTC GCCGCCGAGC AGTCCGCTCC GCGCGCCTAC AACCTGCCCA GCGCGCCACT GGCCACCACC CTCAACCAGA TCGCCAGCCA GGCCGGTATT GCCTTGGCCA TCGACCCGGC ACTGGTCAGC GGCCGCTCCT CGGCCCCGGT AAGCGGCCAG TACGACGGCC TCGGCGCCCT GCAAGCCGCC CTGCGCGGTA CTGGCCTGCA GTTGCAACAG AGCAGCGCGG GCAGCTACAG CCTGGTGGCC GTCCCGGATG GCACCCTGGC GCTACCAGAA ACCACAGTAG ACGCGGCGAG CGTTTCTGAA AGCGCCTGGG GCCCGGTAGA CGGATACCTG GCCAAGCGCA CCGCCGCTGG CACCAAGACC GATACCGCGC TGGTCGAAGT CCCTCGCTCC ATTTCCGTCG CCACTCGCGA GCAGATGAAA GACCGCGGCG TGCACAGCCT GGATGATGCC GTGCGCTACA TGCCTGGCAT CGTGTCCGCC AGCTTCGGCA GCGACACGCG CTACGACTGG ATGCGCGTGC GCGGTTTCGA GCCCACTCAG TTCCTCGACG GCCTGCCACT GCCACGCGGT GTGTACGCCA ACCCGAAAGC CGAAACCTGG AACCTCGACC GCCTTGCCCT GTTGCGCGGC CCGGCGTCCT CGCTGTATGG CCAGACCCCA CCCGGCGGCC TGCTGGACAT GGTCAGCCGT CGCCCACAAG CAGAAAGCGA GCATGAGATC GAACTGCAGT ACGGCAGCGA CAACCATCGC CAGATCAACT TCGCCAGCAC CGGCAAAATC GACGATGATG GCCGCTTTCT GTATGGCGTC AGTGGGGTAA TCCGCGACGG CGGCACGCAG ATCGACCACA TCGACGACAA GCGCTACAAC ATTGCCCCGA GCCTGACCTG GAACATCGAC GAGGACACGA CGCTGACCTT GCTCACCCAG TTCACCCGCG ACGATACCGG TGCCACCAGC CAGTTCCGCC CTATCCAGGG CACCAAGATC GACATGCCAT TCGGCAAGAT CTCGCACCAC AAGAACCTCG GTGACCCGGA CTACGAGTTC TACGACCGCA CCTATTACGC GCTGGGCTAT GCCTTCGAGC ACCGTATCAA CGACGTCTGG CAGTTCCGTC AGAACCTGCG CTACACCAAG ACGGACTTGT CGTTCCAGAC CATCACGCCC GGCAGCTATT ACGAGCCCGG TGGCCCGGTG AAAGACGATG GCACGGTCAG CCGCATGTCC ACCAACACGG ACGAAGACAT CAGCCAGTTC GCCGTGGACA ACAACTTCCA GGCCGACTTC ACCACTGGCG ACATCAGCCA CACCCTGCTG CTCGGCCTGG ACCACCAGCG CATCAACACC AATTACCTGT CGATCTTCGG CTTCAACGTG CCGGACAGCA ATGTCATCAA CCCGGTCTAC GGGGTGCCAA TCACTCGCCC GGACCGCTCC ACGGCGTTCT ACGACTACAA CCAGAAATCC CGTCAGACCG GCTTGTATGT CCAGGACCAG ATGGCGCTTG GCAACTGGCG CCTGACCTTG GGCGGTCGTG AGGACTGGGT GCATACCGGT ACCAAGTACT TCAACCAGGG CGATGCCACC AATACCCAGC GCGACAAGAA GTTCAGCGGC AACGCGGCCA TCAGCTATGT CTTCGATTCG GGCTTCGTGC CGTACCTGTC GTATGCCGAG TCGTTCCAAC CTACCAGCAA TGCCAGCGCT TCAGCGACCG AGTCGCTCAA GCCGACCGAA GGCCAGCAGT GGGAGCTGGG CATCAAGTAC CAACCACCGG GCTCCAACAC CCTGCTGTCG GCAGCCGTGT ATGACCTGAC CCAGAAGAAC GTCTCGGTCA CCAACAACGT CGGTGGCGTA ACCGTCACCA GCCAGACCGG CGAAGTGAAA GTTCACGGCC TGGAGCTTGA AGCGGTTTCC GACGTTACCG AAAACCTGAA AGTGATTGCC GCTTACACCC TGGCAAAATC TGAAGTACAG GACGGCCTGT ACAAAGGCAA CCGCCTCCAG CTGATGCCGA ACCAGCAAGC CTCGGTATGG GGTGACTACA CCTGGCACTC CGGCGTGCTC GACGGCTTTG GCATTGGCCT AGGCGCGCGT TACACCGGCA ATACCTATGG CGACCAAGGC AATACCTACC TGGGCAAGGC CAAGGCCTAC ACGGTGTTCG ATGCATCCGT GCACTACGAT CTGGGTCGCC TGGACACCAG CCTGAAGGGC GCGTCGGTGG CGGTCACTGC CACCAACCTG TTGAATAAGG ATTACCTCTC TACCTGTGAC TCGTACTACT GCTACTACGG CGATGAGCGC AGCGTTGTCG CCAGCGCCAC TTACAAGTTC TGA
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Protein sequence | MSRAVDRILR PSLMALAIAV AAPLASTALF AAEQSAPRAY NLPSAPLATT LNQIASQAGI ALAIDPALVS GRSSAPVSGQ YDGLGALQAA LRGTGLQLQQ SSAGSYSLVA VPDGTLALPE TTVDAASVSE SAWGPVDGYL AKRTAAGTKT DTALVEVPRS ISVATREQMK DRGVHSLDDA VRYMPGIVSA SFGSDTRYDW MRVRGFEPTQ FLDGLPLPRG VYANPKAETW NLDRLALLRG PASSLYGQTP PGGLLDMVSR RPQAESEHEI ELQYGSDNHR QINFASTGKI DDDGRFLYGV SGVIRDGGTQ IDHIDDKRYN IAPSLTWNID EDTTLTLLTQ FTRDDTGATS QFRPIQGTKI DMPFGKISHH KNLGDPDYEF YDRTYYALGY AFEHRINDVW QFRQNLRYTK TDLSFQTITP GSYYEPGGPV KDDGTVSRMS TNTDEDISQF AVDNNFQADF TTGDISHTLL LGLDHQRINT NYLSIFGFNV PDSNVINPVY GVPITRPDRS TAFYDYNQKS RQTGLYVQDQ MALGNWRLTL GGREDWVHTG TKYFNQGDAT NTQRDKKFSG NAAISYVFDS GFVPYLSYAE SFQPTSNASA SATESLKPTE GQQWELGIKY QPPGSNTLLS AAVYDLTQKN VSVTNNVGGV TVTSQTGEVK VHGLELEAVS DVTENLKVIA AYTLAKSEVQ DGLYKGNRLQ LMPNQQASVW GDYTWHSGVL DGFGIGLGAR YTGNTYGDQG NTYLGKAKAY TVFDASVHYD LGRLDTSLKG ASVAVTATNL LNKDYLSTCD SYYCYYGDER SVVASATYKF
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