| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0365 |
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| Symbol | |
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| ID | 5868103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 420892 |
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| End bp | 423582 |
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| Gene Length | 2691 bp |
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| Protein Length | 896 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641545445 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001666612 |
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| Protein GI | 167031381 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0766111 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 0.151073 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGCC AACCCGATGC CGCCAGCCGT GTGGCGGCCG AGGTCGTGAC GCAGTTACCC
GTGCCTTCGC GGCTGGGCAT GCTGCGTTTC GAAAGGCTCA ACGAAGCCAC TTGGGCCATG
CTCTACCTGG ACCCGGCCTG CGAGCGCCAG TTCGGCCTGC AGGCCGGCGA CCTGTGCGCC
CTGGTAGACG CCCCGTACGC CAGCCTGATG GAGCCCGAAG CACGCTACCG GCTGCACGAC
GAGATCCAGC TGCAGCTGGC CCAGCGCGGC TACTACCGCG TGCGCTATAC CCTGCACACC
CCAAGTGCGT CGATGCGCTT GCTGGAGGCC GGTGAAGCCT ACAAGCAGCA CAACCGCCAG
TTGCTGCGCG GCTACCTGAG CGTGCTCGAC GACCAACAGG ACGACACCGG CGAACCCGGC
GCCAGCGACC TGGAATCACG CAACAACCGC CTGCAACTGG CCCTGCAACT GAACCAGCGC
GCCCAGCAAG AACAACTGGA ACACCTGGAG CGTGTGCGTG GCCAGCAGGA CCTTATCCTG
CGCCTGGCCC GCCAGCGCTA CAGCGCCGGC AACTCGCTGC TGGAAGCGGC CCAGCTGATT
ACCCAGAGTG CCTGCGAAAT CTACAAGGTC GACAGCGCCA GTATCTGGCA CCTGGAAGAC
CAGCGCCTGG AACCGATCAT CGCCTGGTAC CGCGATGCGC AGGAGCATCG CCAGCCCGAA
GCCATCGATG CCAGCCGCTT CCCCGACTAC CTCGACGCGC TGCACGCCAG CCGCGCCATC
GACGCCCACA ACGCCGGCCA CGACCCACGC ACCCGCGCCC TGGCGCAAAG CATGCGCCCG
GAAAACAAGG CCATGCTCGA CGCCAGTATC CGCGTCGATG GCCAGGTGGT CGGCGTGCTG
TGCCTGGAGC AGACCGGCCA GGCACGGGCC TGGCAGTCGG ACGAAATTGC CTTTGCCGGC
GAGCTGGCCG ACCAGTTCGC CCAGGTCATC ACCAACCACA ACCGCCGCGC CGCCACCAAC
GCCCTGCACC TGTTCCAACG TGCGGTCGAG CAAAGCGCCA GCGCCTTCCT GCTGGTCAAC
CGCGACGGCC GGGTGGAGTA CGTCAACCCA AGCTTCACCG CCATCACCCA GTACAGCACC
GACGAAGTGC AGGGCCGCCA GCTGGCTGAG CTGCCGGCGC TGGAAAACCT CAGCGAACTG
CTGTTCGACT CGCCGTCGAG CCTGGCCATG GGCAACAGCT GGCAGGGCGA GTTCAAGAGC
CGGCGCAAGA ACCTGGAGCC GTACTGGGGG CAATTGTCGA TTTCCAAGGT GTACGGTGAC
AACCGTGAGC TGACCCACTA CATCGGCATC TACGAAGACG TCACCCAGAC CAAGCTGGCC
CAGCAGCGTA TCGAGCGCCT GGCCTACACC GACAACCTGA CCAACCTGGG CAACCGCCCG
GCGTTCATCC GCAGCCTCGA CGAACGCTTT GCCCGTGATG GCGAAAGCGC GATGTGCCTG
CTGCTGGTGG ACATCGACAA CTTCAAGCGG ATCAACGACA GCCTTGGCCA CCAAACCGGT
GACAAGCTGC TGATCAGCTT GGCCCGGCGC CTGCGCAACA GCCTTCACGC CGGTGGCATC
CTGGCCCGTT TTGCCAGTAA CGAATTCGCC GTGCTGCTCG ACAACACCAG CCTGGAAGAT
GGCCAGGGCG TTGCTCTGCA GTTGCTGCGC ACCCTCGACA AGCCGATGTT CGTCGACAAC
CAGCTGATCA ACGTCACCGC CTCGGTAGGC CTGGCCTGTG CACCGTTGCA CGGCGTCGAC
CCGGCCAGCC TGATGAAAAA CGCCGGCCTG GCGCTGCACA AGGCCAAGGC CAACGGCAAA
CACCAGGTGC AGGTGTTCAC CGAAGTGCTC AATGCCGAAG CCAGCTACAA GCTGTTCGTC
GAGAACAACC TGCGCCGCGC CCTGACCCAG AACGAGCTGG AAGTGTTCTA CCAGCCCAAG
ATCTGCCTGC GCAGCGGCCG CCTGCTGGGG CTGGAAGCCT TGCTGCGCTG GAACCACCCA
GAGCGCGGCA TGATCCGCCC GGACCAGTTC ATCAGCGTGG CGGAAGAGAC CGGCCTGATC
ATCCCCATTG GTAAATGGGT GGTACGCCAG GCGTGCCGCA TGAGCCAGCA ACTGCGCGAG
GCTGGCATGG GCAACCTGCA CGTGGCCATC AACCTGTCAC CCAAGCAGTT CTCCGACCCG
GACCTGGTGG CGTCGATCAG CACCATCCTC AAGGATGAAG CCCTGCCCCC ACACCTGCTT
GAGCTGGAGC TGACCGAAGG CCTGCTGCTG GAGGCCAGCG AAGACACCCA CCGCCAGCTG
GACGAGCTGA AAGCCCTGGG CCTGACCCTG GCCATGGACG ACTTCGGTAC CGGTTATTCG
TCGCTGAGCT ACCTGAAGAA GTTTCCGATC GACATCCTCA AGATCGACCG CAGCTTCATC
AACGAAATCC CCGACAACCA GGACGACATG GAAATCACCT CGGCGGTGGT GGCCATGGCC
CACAACCTGA AGTTGAAGGT GGTGGCCGAA GGGATCGAGA CGCCGGAGCA ACTGGCGTTC
CTGCGTCGGC ACCGCTGCGA CGTGGGCCAG GGTTACCTGT TCGACCGGCC AATTCCGGGG
CGCGAGCTGG CTGAGCGGTT GAAGCGCTAT CCGCGTGGCC CGGTGGCCTG A
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| Protein sequence | MKSQPDAASR VAAEVVTQLP VPSRLGMLRF ERLNEATWAM LYLDPACERQ FGLQAGDLCA
LVDAPYASLM EPEARYRLHD EIQLQLAQRG YYRVRYTLHT PSASMRLLEA GEAYKQHNRQ
LLRGYLSVLD DQQDDTGEPG ASDLESRNNR LQLALQLNQR AQQEQLEHLE RVRGQQDLIL
RLARQRYSAG NSLLEAAQLI TQSACEIYKV DSASIWHLED QRLEPIIAWY RDAQEHRQPE
AIDASRFPDY LDALHASRAI DAHNAGHDPR TRALAQSMRP ENKAMLDASI RVDGQVVGVL
CLEQTGQARA WQSDEIAFAG ELADQFAQVI TNHNRRAATN ALHLFQRAVE QSASAFLLVN
RDGRVEYVNP SFTAITQYST DEVQGRQLAE LPALENLSEL LFDSPSSLAM GNSWQGEFKS
RRKNLEPYWG QLSISKVYGD NRELTHYIGI YEDVTQTKLA QQRIERLAYT DNLTNLGNRP
AFIRSLDERF ARDGESAMCL LLVDIDNFKR INDSLGHQTG DKLLISLARR LRNSLHAGGI
LARFASNEFA VLLDNTSLED GQGVALQLLR TLDKPMFVDN QLINVTASVG LACAPLHGVD
PASLMKNAGL ALHKAKANGK HQVQVFTEVL NAEASYKLFV ENNLRRALTQ NELEVFYQPK
ICLRSGRLLG LEALLRWNHP ERGMIRPDQF ISVAEETGLI IPIGKWVVRQ ACRMSQQLRE
AGMGNLHVAI NLSPKQFSDP DLVASISTIL KDEALPPHLL ELELTEGLLL EASEDTHRQL
DELKALGLTL AMDDFGTGYS SLSYLKKFPI DILKIDRSFI NEIPDNQDDM EITSAVVAMA
HNLKLKVVAE GIETPEQLAF LRRHRCDVGQ GYLFDRPIPG RELAERLKRY PRGPVA
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