| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0348 |
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| Symbol | |
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| ID | 5868088 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 402677 |
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| End bp | 405691 |
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| Gene Length | 3015 bp |
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| Protein Length | 1004 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641545430 |
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| Product | sarcosine oxidase alpha subunit family protein |
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| Protein accession | YP_001666597 |
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| Protein GI | 167031366 |
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| COG category | [E] Amino acid transport and metabolism
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase)
[COG0492] Thioredoxin reductase |
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| TIGRFAM ID | [TIGR01372] sarcosine oxidase, alpha subunit family, heterotetrameric form |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.223565 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.24512 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAGA CCTATCGCCT CGCCAGCGGC GGCCGTATCG ACCGCAGCAA GGTCCTGAAC
TTCACCTTCA ACGGCAAGAC CTACCAGGGT TATGCCGGCG ACAGCCTGGC CGCCGCGTTG
CTGGCCAACG GTGTCGACAT CGTTGGCCGC AGCTTCAAGT ACTCGCGCCC ACGCGGCATC
ATCGCCGCCG GCACCGAAGA GCCGAACGCC ATCCTGCAGA TCGGCTCCAG CGAAGCCACC
CAGATCCCTA ACGTGCGTGC CACCCAGCAG GCGCTGTACG CAGGCCTGGT CGCTACCAGC
ACCAACGGCT GGCCGAACGT CAACAACGAC GTCATGGGCA TCCTCGGCAA GGTAGGCGGC
AGCATGATGC CGCCGGGCTT CTACTACAAA ACCTTCATGT ACCCGAAATC GTTCTGGATG
ACGTACGAGA AGTACATCCG TAAGGCAGCA GGCCTTGGCC GTGCGCCGCT GCAGAACGAC
CCGGACAGCT ACGACTACAT GAACCAGCAC TGCGACGTGC TGATCGTCGG CGCCGGCCCT
GCAGGCCTGG CTGCCGCACT GGCCGCTGCG CGCAGCGGTG CCCGCGTGAT CCTGGCCGAC
GAGCAGGAAG AGTTCGGCGG TAGCCTGCTC GACACCCGCG AAACCCTTGA CGGCAAGCCT
GCCGCCGACT GGGTCAACGC CGTGGTCAAA GAGTTGGAAG GCCTGCCGGA AGTAACCCTG
CTGCCACGTG CCACGGTCAA CGGCTACCAC GACCATAACT TCCTGACCAT TCATGAGCGC
CTCACCGACC ACCTCGGCGA CCGCGCCCCG ATCGGCCAGG TTCGCCACCG CGTGCACCGT
GTGCGTGCCA AGCGTGTGGT ACTGGCGCCC GGCGCCCATG AGCGCCCGTT GGTGTATGGC
AACAACGACG TGCCGGGCAA CATGCTGGCC GGTGCCGTGT CCACCTACAT TCGCCGCTAC
GGTGTGGCCC CTGGCCGCAA GCTGGTGCTG TCGACCAACA ACGACCATGC CTACCGCGCC
GCGCTGGACT GGCACGACGC CGGCCTGCAG GTGGTCGCCA TCGCTGATGC CCGCCACAAC
CCACGTGGCT CGCTGGTTGA AGAGGCCCGT GCAAAAGGCA TTCGCATCCT CACTTCCAGC
GCCGTGGTCG AGGCCAAAGG CAGCAAGCAC GTCACCGGCG CCCGCGTGGC GGCCATCGAT
GTGCAGGCGC ACAAAGTCAC CAGCCCAGGC GAAACCCTCG AGTGTGACCT GATCGCGTCC
TCGGGCGGTT ACAGCCCGAT CGTCCACCTC GCCTCGCACT TGGGCGGTCG CCCGGTATGG
CGTGACGACA TTCTCGGCTT CGTGCCGGGC GATGCACCGC AGAAACGCGA ATGCGTCGGG
GGCATCAACG GTGTCTACGC CCTTGGCGAT GTGATTGCCG ATGGTTTCGA AGGCGGTGTG
CGCGCAGCTA CCGAAGCGGG CTTCAAGGCA ACCGTTGGCA CCCTGCCAAA AACCGTGGCG
CGCAAGGAAG AGGCCACCGT GGCATTGTTC CAGGTGCCGC ACGACAAAGG CACCAAAGGG
CCGAAGCAGT TCGTCGACCA GCAGAATGAC GTGACTGCAG CGGGTATCGA GCTGGCCACC
CGTGAAGGCT TCGAGTCGGT CGAGCACGTC AAGCGCTACA CCGCGCTGGG CTTCGGTACC
GACCAGGGCA AACTGGGCAA CATCAACGGC CTGGCCATCG CCGCCCGTTC GATCGGCATC
ACCATCCCGG AAATGGGCAC CACCATGTTC CGCCCCAACT ACACGCCGGT CACCTTCGGC
GCGGTAGCGG GCCGTCACTG TGGTCACCTG TTCGAGCCCG TGCGCTTCAC TGCCTTGCAT
GCCTGGCACG TGAAGAACGG CGCCGAGTTC GAAGACGTCG GCCAGTGGAA GCGCCCGTGG
TACTTCCCGA AAGCCGGCGA AGACATCCAT GCCGCCGTGG CCCGTGAATG CAAGGCCGTA
CGCGACAGCG TGGGCCTGCT GGACGCCTCG ACCCTGGGCA AGATCGACAT CCAGGGCCCG
GACGCCCGTG AGTTCCTCAA CCGTATCTAC ACCAACACCT GGACCAAGCT CGACGTGGGC
AAGGCCCGCT ACGGCCTGAT GTGCAAGGAA GACGGTATGG TCTTCGACGA CGGCGTAACC
GCCTGCGTCG GCGACAACCA CTTCATCATG ACCACCACCA CCGGCGGCGC CGCGCGCGTG
CTGCAGTGGA TGGAGCTGTA CCACCAGACT GAATGGCCGG AGCTGAAGGT GTACTTCACC
TCGGTCACCG ACCACTGGGC CACCATGACC CTGTCCGGCC CCAACAGCCG CAAGCTGCTG
AGCGAGCTGA CCGACATCGA CATGGACAAG GAAGCCTTCC CGTTCATGAC CTGGAAGGAA
GGCAACGTTG GCGGCGTACC GGCCCGTGTG TTCCGTATCT CGTTCACCGG CGAGCTGTCG
TACGAAGTCA ACGTGCAGGC CAACTACGCC ATGGGCGTGC TGGAACAGAT CATTGAGGCC
GGCAAGAAGT ACAACCTGAC CCCGTATGGC ACCGAGACCA TGCACGTACT GCGTGCCGAG
AAGGGCTTCA TCATCGTTGG CCAGGACACC GACGGTTCGA TGAACCCGGA CGACCTGAAC
ATGAGCTGGT GCGTTGGCCG CAACAAACCG TTCTCGTGGA TCGGCCTGCG TGGCATGAAC
CGCGAAGACT GCGTGCGTGA GAACCGCAAG CAGCTGGTAG GCCTGAAGCC GGTCGACCCG
ACCAAGTGGC TGCCGGAAGG CGCTCAGTTG GTATTCGACC CGAAACAGCC GATCCCGATG
GACATGGTTG GCCACGTCAC CTCCAGCTAT GCCTCCAACT CCCTGGGCTA CTCGTTTGCC
ATGGGTGTGG TCAAAGGCGG CCTCAAGCGC ATGGGCGAGC GAGTCTACTC GCCGCAGGCG
GATGGCAGCG TGATCGAGGC GGAGATCGTG TCTTCGGTGT TCTTCGATCC GAAGGGTGAG
CGGCAGAACG TCTAA
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| Protein sequence | MSQTYRLASG GRIDRSKVLN FTFNGKTYQG YAGDSLAAAL LANGVDIVGR SFKYSRPRGI
IAAGTEEPNA ILQIGSSEAT QIPNVRATQQ ALYAGLVATS TNGWPNVNND VMGILGKVGG
SMMPPGFYYK TFMYPKSFWM TYEKYIRKAA GLGRAPLQND PDSYDYMNQH CDVLIVGAGP
AGLAAALAAA RSGARVILAD EQEEFGGSLL DTRETLDGKP AADWVNAVVK ELEGLPEVTL
LPRATVNGYH DHNFLTIHER LTDHLGDRAP IGQVRHRVHR VRAKRVVLAP GAHERPLVYG
NNDVPGNMLA GAVSTYIRRY GVAPGRKLVL STNNDHAYRA ALDWHDAGLQ VVAIADARHN
PRGSLVEEAR AKGIRILTSS AVVEAKGSKH VTGARVAAID VQAHKVTSPG ETLECDLIAS
SGGYSPIVHL ASHLGGRPVW RDDILGFVPG DAPQKRECVG GINGVYALGD VIADGFEGGV
RAATEAGFKA TVGTLPKTVA RKEEATVALF QVPHDKGTKG PKQFVDQQND VTAAGIELAT
REGFESVEHV KRYTALGFGT DQGKLGNING LAIAARSIGI TIPEMGTTMF RPNYTPVTFG
AVAGRHCGHL FEPVRFTALH AWHVKNGAEF EDVGQWKRPW YFPKAGEDIH AAVARECKAV
RDSVGLLDAS TLGKIDIQGP DAREFLNRIY TNTWTKLDVG KARYGLMCKE DGMVFDDGVT
ACVGDNHFIM TTTTGGAARV LQWMELYHQT EWPELKVYFT SVTDHWATMT LSGPNSRKLL
SELTDIDMDK EAFPFMTWKE GNVGGVPARV FRISFTGELS YEVNVQANYA MGVLEQIIEA
GKKYNLTPYG TETMHVLRAE KGFIIVGQDT DGSMNPDDLN MSWCVGRNKP FSWIGLRGMN
REDCVRENRK QLVGLKPVDP TKWLPEGAQL VFDPKQPIPM DMVGHVTSSY ASNSLGYSFA
MGVVKGGLKR MGERVYSPQA DGSVIEAEIV SSVFFDPKGE RQNV
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