| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0298 |
|---|
| Symbol | |
|---|
| ID | 5867995 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 348463 |
|---|
| End bp | 350760 |
|---|
| Gene Length | 2298 bp |
|---|
| Protein Length | 765 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641545378 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_001666547 |
|---|
| Protein GI | 167031316 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.496708 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCTA TGAGCACCCC GAAAGTCTTC ACCCCCAGCA GCCCAAGTGG CAGTCGTCTC
AAGCCGCTGG CCTTCTTCGT TGCCGTTGCC ATCAGCGGTG GCGCCATGGC TGCCGACGGT
AAACCCCTGG AGCTGGATGC CACGCAGATC GAAGACAGCG CGTTACTGCC AGCCGACGAT
GCCGGCCAGT TGGGCTACAC GGTCGAGCGC ACTCGCAGCT CCACCGGCCT CGATCTGACG
CCGCGACAGA CGCCACAATC GGTCACCACC ATCACCCGTC AGCAGATGGA TGACCGCGAC
ATCCACACCA TCGAGCAGGC GCTGCAAACC ACGCCGGGGG TAACGGCCAA CAAGTCCGAA
GTGGGTGGGC GTACCGACTA CCGTGCCCGT GGTTACTCGA TCAGCAACTG GAAGGTCGAT
GGCCTGCAGA CCCAGGGCGG CTCTGACTTC AGCGGCAGCG GCAATGCGCT GAACATGGAC
CTGTACGAGC GCATCGACAT CGTGCGCGGC GCCAACGGTC TGCTGGGCGG CACCGGCGAC
CCGTCGGCCA CCGTCAACCT GATCCGCAAG GCACCGACCA AGACCTTTGG TGGCAGCGCC
TATGCCACCT ACGGCAGCTG GGACAAACGC CGTCTGGGTG CCGACCTAAA CCTGCCATTG
TCCGAAGACG GCCGGCTGCG CTCGCGCTTC GTGATGACCC AGCAAGACGC CAACTCGTTC
CGCGACAACC AGTCCGAGCG CTCCCGCGCC GCGCTGGCCA ACTTCGAATT CGACCTGGAC
GAGGCGACTA CCCTCGGCGC TGGCTACCAG TACGAGTACA ACAAGGTGGT TGGTGGCGGC
TGGGGGGCGA ACATCCCGCT GTGGTACCGC GACGGCAGCA AGACCGACCT GCCACGTAGC
ACCAACGTGG TGCCCAGCTG GAGCTTTGGC GAGTACACCA CCCGCACTGC GTTCGGCTCG
TTGGAGCACC GCTTCGACAA CGACTGGACC CTGGACCTGA AAGGCGCCCA GGCCACTACC
GAAGCCCTGA ACCACCGTGG CCTGGCGAAG GTCAACTCGG CGGGCCGTGG CAGCTACGGC
GGCTACTGGG ACCAGAATGG CAGCGGCGCC GTGCTCAATG GCCTGCACAG CTCCAGCGAC
ACCACCCAGC AATCGGCGCA AATCGACCTG TCCGGTCCGT TCCAGTTGTT CGGCCGTACC
CACCAGGCCA TGGTTGGCTA CAACGACAGC CGCACGGTGA GCTGGTCGCC GGAATACTCC
TGCACCATGG TCGGTGACGG CATGGCCAGT GCGCCTGCTT TGGGCTGCCA GTTTCGCGCC
AACAACGGCT TCCCGCTGAC CGACTGGCGC AATGGAGTGG ATGACGACTA CGACATCCTC
GCCTCGCGCA CCGGCCGCCA CAGCAAGACC ACCACCCGCC TGCAGGGCAT GTACGCCGCC
ACCCGCCTGA GCATCACCGA CCCGCTGTCG GTGATCGTCG GCGTGCGCAC CAGCAACTAC
TCGTCCGTTA CCCGTAGCGT GGCCGGCGTG CGCAGCAGCC AGGAAGAGAA CGGCATCGTC
ACCCCTTACC TGGGTGCGGT GTACGACCTC AACGAGAATT ACTCGGTGTA TGCCAGCTAC
ACCGACATCT TCACACCGCA AACTTCTGAA ACCAGCAGCG GCAGCAAGGT CGAGCCGATT
CGCGGGCAAA GCTACGAGAC CGGCATCAAA GGTGAGTGGT TCGATGGCCG GTTGAACGCC
TCGGCGGCGT ACTTCCGCAC CAAGCAGGAA AACAAGGCCG TGCTGGATGG CGACCTGACC
ACCCCGACCG GTGGCAATGC CTACAAGGCC GGTTCCGGGC AGGAAACCGA CGGTATCGAC
CTGGAAGTCG CGGGTGCCCT GAGCCCCAAC TGGAACGTGT ATGCCGGCTA CACCTATCTG
CATTTCCGCC GCGTCGACAG CGACGGTCGC AGCGACCCGT CGCACCTGTT CAAGGCCTCG
ACCACCTACC GCCTGAGCGG CCCGCTCGAC CGCCTCACCC TGGGCGCAGG CGTGACCGCG
CAAACCAACA TTCGCGCCAT TTCCAGCCCG GCAGGTCAGC CCACCAATGG CGTGAGCAAT
GGTGCCACTG ACGTGAACTG GTCCGGTTAT GCCATCTGGA ATGCCATGGC CAAGTACCAG
CTGACCGACG ACACCAGCGT CAGCCTCAAC GCCAACAACC TGTTCGACAA GCACTACTAC
ACCCAGTACG GGTTCTACGC CGGGGCAATC TATGGCGACC CGCGTAACCT TTCGCTGACT
GTCAGCACTG CCTTCTGA
|
|---|
| Protein sequence | MNPMSTPKVF TPSSPSGSRL KPLAFFVAVA ISGGAMAADG KPLELDATQI EDSALLPADD
AGQLGYTVER TRSSTGLDLT PRQTPQSVTT ITRQQMDDRD IHTIEQALQT TPGVTANKSE
VGGRTDYRAR GYSISNWKVD GLQTQGGSDF SGSGNALNMD LYERIDIVRG ANGLLGGTGD
PSATVNLIRK APTKTFGGSA YATYGSWDKR RLGADLNLPL SEDGRLRSRF VMTQQDANSF
RDNQSERSRA ALANFEFDLD EATTLGAGYQ YEYNKVVGGG WGANIPLWYR DGSKTDLPRS
TNVVPSWSFG EYTTRTAFGS LEHRFDNDWT LDLKGAQATT EALNHRGLAK VNSAGRGSYG
GYWDQNGSGA VLNGLHSSSD TTQQSAQIDL SGPFQLFGRT HQAMVGYNDS RTVSWSPEYS
CTMVGDGMAS APALGCQFRA NNGFPLTDWR NGVDDDYDIL ASRTGRHSKT TTRLQGMYAA
TRLSITDPLS VIVGVRTSNY SSVTRSVAGV RSSQEENGIV TPYLGAVYDL NENYSVYASY
TDIFTPQTSE TSSGSKVEPI RGQSYETGIK GEWFDGRLNA SAAYFRTKQE NKAVLDGDLT
TPTGGNAYKA GSGQETDGID LEVAGALSPN WNVYAGYTYL HFRRVDSDGR SDPSHLFKAS
TTYRLSGPLD RLTLGAGVTA QTNIRAISSP AGQPTNGVSN GATDVNWSGY AIWNAMAKYQ
LTDDTSVSLN ANNLFDKHYY TQYGFYAGAI YGDPRNLSLT VSTAF
|
|---|
| |