| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0253 |
|---|
| Symbol | |
|---|
| ID | 5867950 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 295222 |
|---|
| End bp | 297225 |
|---|
| Gene Length | 2004 bp |
|---|
| Protein Length | 667 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641545333 |
|---|
| Product | choline/carnitine/betaine transporter |
|---|
| Protein accession | YP_001666502 |
|---|
| Protein GI | 167031271 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1292] Choline-glycine betaine transporter |
|---|
| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.984352 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGCAC CGAACCCTTC CCTTGCCAAT GGCAAGATCC GCATGAACCC CCCGGTGTTC
TACTTCGCGG CTAGTTTCAT CCTCATCTTT GGCCTGGTGG TCATCTCCAA CCCGCAAGCG
GCAGGTGACT GGTTGCTGGC GGCGCAGAAC TGGGCGGCCA ACACGGTCGG CTGGTACTAC
ATGCTGGCGA TGACGCTGTA CCTGGTCTTC GTGGTGGTCA CCGCCTTGTC TGGCTACGGC
AAGATCAAGC TCGGTGCCGA CCACGACGAA CCCGAGTTCA GTTACCTGTC GTGGGCCGGC
ATGCTGTTTG CCGCTGGTAT CAGCATCACC CTGTTCTTTT TCTGCGTCTC CGAACCGCTG
ACCCACATGC TGCAGCCGCC CCAGGGCGAA GCGGGCACGG CCGAGGCCGG GCGTCAGGCA
ATGCAGATTC TGTTCCTGCA CTGGGGCCTG CATGGCTGGG GCGTCTTCGC CTTCGTCGGT
ATGGCGCTGG CGTACTTCGC CTACCGCCAC AACCTACCGC TGGCCCTACG CTCGGCGCTG
TACCCGCTGA TCGGCAAACG CATCAACGGC CCGATCGGCT ACGCGGTGGA CGGCTTCGGC
ATCATCGCCA CGGTGTTCGG CCTGGGCGCC GACATGGGCT TTGGGGTGCT GCATCTGAAC
GCCGGCCTCG ACTACCTGTT CGGCATCAGC CACAGCCAGT GGGTGCAGGT GATCCTCATC
ACCCTGATGA TGGGCGCGGC CGTGGCCGTG GCTGTCGCCG GGGTGGAAAA GGGGGTGCGG
GTGATGAGCG ACATCAACCT GTTCCTGGCC TGCGCACTGC TGCTGTTCGT GCTGTTCGCC
GGCCCTACCC AGCACCTGTT CAATACGCTC ATCCAGAACC TGGGCGACTA CCTGGGCGCT
TTGCCACGCA AGAGCTTCGA CGTGTATGCC TACGGTGAAA ACCGCGATTG GCTGGGTGGC
TGGACAGTGT TCTATTGGGC CTGGTGGATT GCCTGGGCGC CGTTCGTGGG GCTGTTCATC
GCCCGTATCT CCCGTGGCCG CACCATCCGC GAGTTCGTCT TTGGCGTGCT GTTGATTCCG
CTCGGTTTCA CCCTGGCGTG GATGTCGATC TTCGGCAACA GCGCGCTGGA CCAGGTGATC
AACCACGGCA TGACCGCGCT GGGACAGTCG GCCCTGGATA ACCCGTCGAT GAGCCTGTAC
CTGCTGCTGG AGACCTACCC CTGGAGCAAG GCGGTGATCG CCACCACGGT GTTCATCAGC
TTCGTGTTCT TCGTTACCTC GGCCGACTCG GGCACCGTGG TGCTGTCGAC CTTGTCGGCC
AAGGGCGGCG AAGCCGACGA GGATGGGCCG AACTGGCTGC GCATCTTCTG GGGCGCGATG
ACTGCGCTGA TCACCAGCGC GCTGTTGTTC GCCGGCAGTA TCGATTCGCT GAAGTCGGCG
GTGGTGCTGA CTTCGTTGCC GTTCTCGCTG ATTCTGCTGT GCATGATGTG GGGGCTGCAC
AAGGCGTTCT ACCTCGAGTC GCAGCGGCAG ATCGCGCAGA TGCACTCGCT GGCGCCGTTT
GCCCAGTCAC GTCGCGGCCG TGGCGGCTGG CGCCAGCGCC TGAGCCAGGC GGTGCATTTC
CCGTCGCGTG ATGAGGTGTA CCGTTTCATG GATGACGTGG TGCGCCCGGC GATTGCCGAC
GTGCGGGAAG TGTTCGAGCA GAAGGGCCTG GTGCTGATTA CCCAGGACGA CCCGAGCCAC
GACAATGTCA GCTTGAAGAT TGGCCATGGT GAGGAACAGC CGTTCATTTA CCAGGTGCAG
ATGCGTGGTT ATTTCACGCC ATCGTTCGCC CTGGGTGGGC TGGGGACGCA GGAGTTGAAG
AACCGCCGTT ATTATCGGGC GGAGGTGCAC CTGAGCGAAG GCAGCCAGAA CTATGACCTG
GTGGGCTACA GCAAGGAGCA GATCATCAAC GACATCCTCG ACCAGTACGA GCGGCACATG
CAGTACTTGC ATCTGGTTCG GTAA
|
|---|
| Protein sequence | MSAPNPSLAN GKIRMNPPVF YFAASFILIF GLVVISNPQA AGDWLLAAQN WAANTVGWYY
MLAMTLYLVF VVVTALSGYG KIKLGADHDE PEFSYLSWAG MLFAAGISIT LFFFCVSEPL
THMLQPPQGE AGTAEAGRQA MQILFLHWGL HGWGVFAFVG MALAYFAYRH NLPLALRSAL
YPLIGKRING PIGYAVDGFG IIATVFGLGA DMGFGVLHLN AGLDYLFGIS HSQWVQVILI
TLMMGAAVAV AVAGVEKGVR VMSDINLFLA CALLLFVLFA GPTQHLFNTL IQNLGDYLGA
LPRKSFDVYA YGENRDWLGG WTVFYWAWWI AWAPFVGLFI ARISRGRTIR EFVFGVLLIP
LGFTLAWMSI FGNSALDQVI NHGMTALGQS ALDNPSMSLY LLLETYPWSK AVIATTVFIS
FVFFVTSADS GTVVLSTLSA KGGEADEDGP NWLRIFWGAM TALITSALLF AGSIDSLKSA
VVLTSLPFSL ILLCMMWGLH KAFYLESQRQ IAQMHSLAPF AQSRRGRGGW RQRLSQAVHF
PSRDEVYRFM DDVVRPAIAD VREVFEQKGL VLITQDDPSH DNVSLKIGHG EEQPFIYQVQ
MRGYFTPSFA LGGLGTQELK NRRYYRAEVH LSEGSQNYDL VGYSKEQIIN DILDQYERHM
QYLHLVR
|
|---|
| |