Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0250 |
Symbol | |
ID | 5867947 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 292293 |
End bp | 292961 |
Gene Length | 669 bp |
Protein Length | 222 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 641545330 |
Product | polar amino acid ABC transporter, inner membrane subunit |
Protein accession | YP_001666499 |
Protein GI | 167031268 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0765] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGCTG AAAGCCTGCA ACTCGTTGTC GACTCCACGC CCTTCCTGCT GAAGGGCGCG GGTTATACAG TGCTGCTCAG TGTCGGCGGC ATGTTCTTCG GCCTGCTGCT GGGCTTTGCC CTGGCGCTGA TGCGGCTGTC GAAGATTTTG CCGCTGAACT GGCTGGCGCG GGTCTACGTG TCGTTCTTCC GCGGCACGCC GCTGCTGGTG CAGCTGTTCG TGATCTATTT CGGCATGCCA CAGATTGGCA TCGAGCTCGA CCCGATACCT GCCTCGCTGA TCGGCCTGTC GCTGAACATG GCGGCCTACA TCTGCGAAAT CCTGCGTGCG GCGATTTCCT CGATCGACCG GGGCCAGTGG GAAGCTGCCG CCAGCATCGG CATGACCCGC GTCCAGGCCA TGCGCCGGGC GATCCTGCCA CAGGCCTTGC GCACCGCCCT GCCACCGTTG GGTAACAGCT TCATTTCGCT GGTCAAGGAC ACCGCCCTGG CGGCGACCAT CCAGGTGCCC GAGCTGTTCC GCCAGGCGCA GCTGATTACC GCACGTACCT TCGAAGTGTT CACCATGTAC GTGGCAGTCG CCGTTATCTA CTGGGTGCTG TGCAGCATCC TTGCGCACTT CCAGAACCGC ATGGAAGCGC GGGTCAACCA GCATGACCAG GAGCAATGA
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Protein sequence | MIAESLQLVV DSTPFLLKGA GYTVLLSVGG MFFGLLLGFA LALMRLSKIL PLNWLARVYV SFFRGTPLLV QLFVIYFGMP QIGIELDPIP ASLIGLSLNM AAYICEILRA AISSIDRGQW EAAASIGMTR VQAMRRAILP QALRTALPPL GNSFISLVKD TALAATIQVP ELFRQAQLIT ARTFEVFTMY VAVAVIYWVL CSILAHFQNR MEARVNQHDQ EQ
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