Gene PputGB1_0250 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_0250 
Symbol 
ID5867947 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp292293 
End bp292961 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content62% 
IMG OID641545330 
Productpolar amino acid ABC transporter, inner membrane subunit 
Protein accessionYP_001666499 
Protein GI167031268 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0765] ABC-type amino acid transport system, permease component 
TIGRFAM ID[TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGCTG AAAGCCTGCA ACTCGTTGTC GACTCCACGC CCTTCCTGCT GAAGGGCGCG 
GGTTATACAG TGCTGCTCAG TGTCGGCGGC ATGTTCTTCG GCCTGCTGCT GGGCTTTGCC
CTGGCGCTGA TGCGGCTGTC GAAGATTTTG CCGCTGAACT GGCTGGCGCG GGTCTACGTG
TCGTTCTTCC GCGGCACGCC GCTGCTGGTG CAGCTGTTCG TGATCTATTT CGGCATGCCA
CAGATTGGCA TCGAGCTCGA CCCGATACCT GCCTCGCTGA TCGGCCTGTC GCTGAACATG
GCGGCCTACA TCTGCGAAAT CCTGCGTGCG GCGATTTCCT CGATCGACCG GGGCCAGTGG
GAAGCTGCCG CCAGCATCGG CATGACCCGC GTCCAGGCCA TGCGCCGGGC GATCCTGCCA
CAGGCCTTGC GCACCGCCCT GCCACCGTTG GGTAACAGCT TCATTTCGCT GGTCAAGGAC
ACCGCCCTGG CGGCGACCAT CCAGGTGCCC GAGCTGTTCC GCCAGGCGCA GCTGATTACC
GCACGTACCT TCGAAGTGTT CACCATGTAC GTGGCAGTCG CCGTTATCTA CTGGGTGCTG
TGCAGCATCC TTGCGCACTT CCAGAACCGC ATGGAAGCGC GGGTCAACCA GCATGACCAG
GAGCAATGA
 
Protein sequence
MIAESLQLVV DSTPFLLKGA GYTVLLSVGG MFFGLLLGFA LALMRLSKIL PLNWLARVYV 
SFFRGTPLLV QLFVIYFGMP QIGIELDPIP ASLIGLSLNM AAYICEILRA AISSIDRGQW
EAAASIGMTR VQAMRRAILP QALRTALPPL GNSFISLVKD TALAATIQVP ELFRQAQLIT
ARTFEVFTMY VAVAVIYWVL CSILAHFQNR MEARVNQHDQ EQ