| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0242 |
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| Symbol | |
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| ID | 5867939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 282750 |
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| End bp | 284645 |
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| Gene Length | 1896 bp |
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| Protein Length | 631 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641545322 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001666491 |
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| Protein GI | 167031260 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00436408 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTGTTT CCGTTCGCGA CGCCTTGCGC ATGGCTGCGC TGTATGTGGT GCTCTCGATC
CTCTGGCTGG CGCTCGCCGA GGTGATGCTG CACGGCATGA CTGACGACCC CCTGGCACTG
ACCGTGGGGC GGCAGATCAA CATCGTGCTG TGGGTGTTGT TCAGTGCCGT ACTGATCTAC
GTTTCCAGGG TACGGCTGCT GAACTTCATC GGTGCTGGTG CGCGCTTGCG CTGCGAGGAT
CGCGAGCGGC TGCGCATGGC CGCCGCAGTG TTCGACAGTA CCCTCGAAGG TGTACTGGTC
ACCGACCGCC AGGGCCTTAT CGTGCACGTC AACCGTGCCT TCATGCGCAT CACCGGCTAT
CAGCAGGACG AGGTGATGGG CCAGCGCCCG AGCAAGTTCA AGTCCGGTCG CCATGGCCTT
GCGTTCTACC AGCAGATCTT CGCCACCCTG GCCGAACAGG GCGAGTGGAG CGGTGAAATC
TGGAACCGAC GCAAGAGCGG CGAAATTTAT CCGCAGTGGC AGACCATATG TGCCATTCGC
GATGACGATG GTGAGCTCAG CCATTACGTG GCGGTGTTCA GTGACATCAG TGCGATCAAG
CATACAGAAC AGGAGCTGGC CTACCTGGCC CACCACGACC CATTGACGGG CCTGCCCAAC
CGCCTGCTGT TCACCGACCG GGTCGAGCAG GCATTGGCGG CGGCACAGGC CAACAAGCGC
GGTTGCGCGC TGTTGCTGCT GGACCTGGAC CACTTCCAGA GCATCAACGA TGGCCTTGGC
CACACCATCG GTGACCAGTT GCTGAAACGG GTGGGCGAGC GCCTGGGTGA GGTGCTGGGT
AGCGGCGTGA CCCTGGCGCG CCTGGGCGGC GACGAGTTCG CTGTGCTGGC CGAGAACTGC
CAACAGGTCG GCCAGGCGGG CAAGCTGGCG CAGTGCATTA TCGAGCGCAT GCGCGAGCCG
TTCCTGTGCG AGGAAAATCG CCTGTTCATC AGTGCCAGCG TCGGTATCAG CCTGTTCCCC
AGCGATGCGT TGGGCGCCGA ACAGTTGCTG CGTAATGCCG ACGCGGCGTT GTACAAGGCC
AAAAGCAACG GGCGGGCCTG CTATGCGCTG TACACCGAAG AGCTGACTGC CCACGCCCAA
CACCGGGTCG AGACTGCTGG AGAGCTGCGC CGGGCCCTGG AGCAGGATGA GCTGCGGGTG
TATTTCCAGC CGGTACATGA CCTGGCGACA GGCCGACAGG TCGGGGTCGA GACGTTGGTG
CGCTGGCAGC ATCCCCAGCG GGGCCTGGTG CCGCCGGGCG AGTTCATCCC GATTGCCGAG
CGCACCGGGC TGATTGCCGA AATCGATACC TGGGTGCTGC GCCAGGCTTG CCGGCAAATG
GTGCAGTGGC AGGCCGAAGG CAGGCAGCTG GCCTTTGTGG CGGTGAACAT ATCCAGCCGC
CTGTTTGGCC AGCATGAGCT GTACCGGCAA GTCGCCGCGG TTTTGCATGA AACGGGCCTG
CCCCCAGCCT TGCTGGAGCT GGAAGTGACG GAAAGCGCGG TGATGGAAGA CCCTGAGGTG
GCGCTGGAGC AGCTGCACCG TTTGCGCGAG CTGGGGGTGA CCCTGGCCAT CGACGACTTC
GGCACCGGGT ATTCGTCGCT GTTGCGGCTC AAGCGTTTGC CCGTGCAGAA GCTGAAGATC
GACCAGGGCT TCGTTGCCGG TTTGCCGCTG GATGAGGATG ACATCGCGAT CGTGCGGGTG
ATCATCGCCC TGGCCCGCAG CATGGGCATG CAGGTGCATG CCGAGGGCAT CGAGCAGGCA
GAGCAGGCCA GTTTCCTGCT GCAGGAGCAG TGTCAATTGG GCCAAGGGTA CTGGTTCGGG
CGGCCGGTGC CGGCTGGGGA TCTTCGCTGG GATTGA
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| Protein sequence | MSVSVRDALR MAALYVVLSI LWLALAEVML HGMTDDPLAL TVGRQINIVL WVLFSAVLIY
VSRVRLLNFI GAGARLRCED RERLRMAAAV FDSTLEGVLV TDRQGLIVHV NRAFMRITGY
QQDEVMGQRP SKFKSGRHGL AFYQQIFATL AEQGEWSGEI WNRRKSGEIY PQWQTICAIR
DDDGELSHYV AVFSDISAIK HTEQELAYLA HHDPLTGLPN RLLFTDRVEQ ALAAAQANKR
GCALLLLDLD HFQSINDGLG HTIGDQLLKR VGERLGEVLG SGVTLARLGG DEFAVLAENC
QQVGQAGKLA QCIIERMREP FLCEENRLFI SASVGISLFP SDALGAEQLL RNADAALYKA
KSNGRACYAL YTEELTAHAQ HRVETAGELR RALEQDELRV YFQPVHDLAT GRQVGVETLV
RWQHPQRGLV PPGEFIPIAE RTGLIAEIDT WVLRQACRQM VQWQAEGRQL AFVAVNISSR
LFGQHELYRQ VAAVLHETGL PPALLELEVT ESAVMEDPEV ALEQLHRLRE LGVTLAIDDF
GTGYSSLLRL KRLPVQKLKI DQGFVAGLPL DEDDIAIVRV IIALARSMGM QVHAEGIEQA
EQASFLLQEQ CQLGQGYWFG RPVPAGDLRW D
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