| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0237 |
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| Symbol | gabD |
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| ID | 5867934 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 275860 |
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| End bp | 277302 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641545317 |
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| Product | succinate-semialdehyde dehydrogenase I |
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| Protein accession | YP_001666486 |
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| Protein GI | 167031255 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR01780] succinate-semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCTCA AAGACGCTCA GTTGTTCCGC CAGCAAGCCT ATATCAATGG TGAGTGGCTG
GATGCGGACA ACGGCCAGAC CATCAAGGTG ACCAACCCGG CCACCGGTGA AGTCATCGGT
ACCGTGCCGA AGATGGGTAC CGCGGAAACC CGCCGTGCCA TCGAAGCCGC CGACAAGGCC
CTGCCGGCCT GGCGTGCCCT GACCGCCAAA GAGCGTTCGG CCAAGCTGCG TCGCTGGTTT
GAACTGATGA TCGAGAACCA GGACGACCTG GCTCGCCTGA TGACCACCGA GCAAGGCAAG
CCACTGGCCG AAGCCAAGGG CGAAATCGCC TACGCCGCCT CGTTCATCGA GTGGTTCGCC
GAAGAAGCCA AGCGCATCTA CGGTGACACC ATCCCTGGCC ACCAGCCAGA CAAGCGCCTG
ATCGTCATCA AGCAGCCAAT CGGTGTTACC GCGGCCATCA CGCCGTGGAA CTTCCCGGCC
GCCATGATCA CCCGTAAAGC CGGCCCGGCC CTGGCCGCTG GCTGCACCAT GGTGCTCAAG
CCTGCTTCGC AAACCCCTTA CTCCGCCCTG GCCCTGGTAG AGCTGGCCCA CCGTGCCGGT
ATCCCGGCTG GCGTGCTGAG CGTGGTTACC GGTAGCGCTG GTGAAGTTGG CGGCGAGCTG
ACCGGCAACT CCCTGGTACG CAAACTGTCC TTCACCGGCT CGACCGAAAT CGGTCGCCAG
CTGATGGAAG AATGTGCCAA GGACATCAAG AAGGTTTCCC TGGAGCTGGG TGGCAACGCC
CCGTTCATCG TGTTCGACGA CGCCGATCTG GACAAGGCGG TCGAAGGCGC GATCATCTCC
AAGTACCGCA ACAACGGCCA GACCTGCGTC TGCGCCAACC GTATCTACGT GCAGGACGGC
GTCTACGACG CGTTCGCCCA GAAGCTGGCC GCTGCTGTGG CCAAGCTGAA GATCGGTAAC
GGCCTGGAAG AAGGCACCAC CACTGGCCCG CTGATCGACG GCAAGGCTGT CGCCAAGGTT
CAGGAACACA TCGAAGACGC CGTTGGCAAA GGCGCCAAGG TGCTGTCCGG TGGCAAGCTG
ATCGAAGGCA ACTTCTTCGA GCCGACCATT CTGGTTGACG TGCCGAAGAC TGCTGCTGTC
GCCAAGGAAG AGACCTTCGG CCCATTGGCG CCGCTGTTCC GCTTCAAAGA CGAAGCCGAA
GTCATCGCCA TGTCCAACGA CACCGAGTTC GGCCTGGCCT CGTACTTCTA CGCCCGCGAC
ATGAGCCGCG TGTTCCGTGT TGCCGAAGCG CTGGAATACG GCATGGTGGG TATCAACACC
GGCCTGATCT CCAACGAAGT GGCGCCGTTC GGTGGCATCA AGGCTTCGGG CCTGGGCCGC
GAAGGTTCCA AGTACGGTAT CGAGGACTAC CTCGAAATCA AATACCTGTG CATCAGCGTC
TGA
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| Protein sequence | MQLKDAQLFR QQAYINGEWL DADNGQTIKV TNPATGEVIG TVPKMGTAET RRAIEAADKA
LPAWRALTAK ERSAKLRRWF ELMIENQDDL ARLMTTEQGK PLAEAKGEIA YAASFIEWFA
EEAKRIYGDT IPGHQPDKRL IVIKQPIGVT AAITPWNFPA AMITRKAGPA LAAGCTMVLK
PASQTPYSAL ALVELAHRAG IPAGVLSVVT GSAGEVGGEL TGNSLVRKLS FTGSTEIGRQ
LMEECAKDIK KVSLELGGNA PFIVFDDADL DKAVEGAIIS KYRNNGQTCV CANRIYVQDG
VYDAFAQKLA AAVAKLKIGN GLEEGTTTGP LIDGKAVAKV QEHIEDAVGK GAKVLSGGKL
IEGNFFEPTI LVDVPKTAAV AKEETFGPLA PLFRFKDEAE VIAMSNDTEF GLASYFYARD
MSRVFRVAEA LEYGMVGINT GLISNEVAPF GGIKASGLGR EGSKYGIEDY LEIKYLCISV
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