| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0210 |
|---|
| Symbol | |
|---|
| ID | 5867906 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 247027 |
|---|
| End bp | 247770 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641545289 |
|---|
| Product | LytTR family two component transcriptional regulator |
|---|
| Protein accession | YP_001666459 |
|---|
| Protein GI | 167031228 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.375452 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGTCC TGATCGTTGA TGACGAACCC CAAGGCCGTG AACGCCTCAC CCGGCTGCTC
GGCGAACTGG AGGGTTACAC CGTGCTGGAG CCCAGCGCCA CCAACGGCGA GGAGGCCCTG
GCGCTGATCG AAAGCCTCAA GCCCGATGTG GTCCTGCTGG ACATCGGCAT GCCAGGCCTG
GATGGCCTGC AGGTCGCCGC TCGCCTGTGC GAACGCGAGG CGCCGCCGGC GGTGGTGTTT
TGCACCGGGG ACGATGAATA CGGTGCCGAG GCATTCAAGG ACAGTACCCT CAGCCATGTG
ACCAAGCCTT TCCAGCCCCA GGCGTTGCGC GATGCCTTGC GCAAGGCCGA AAAACCCAAC
CGTGCCCAAT TGGCGGCGCT TACCCGGCCA GCCAACGAAG GTGGTGGCCC ACGCAGCCAC
ATCAGTGCCC GTACACGTAA AGGCATCGAA TTGATCCCTA TACCCCAGGT GATCTATTTC
ATCGCCGACC ACAAGTACGT GACCTTGCGC CACGAAGCCG GGGAAGTACT GCTCGATGAG
CCACTCAAGG CCCTGGAAGA CGAGTTTGGC GAACGCTTCG TGCGCATCCA CCGCAATGCG
TTGGTCGCCC GCGAGCGCAT CGAACGCCTG CAGCGCACCC CGCTGGGGCA CTTTCAGCTG
TACCTGAAAG GCCTGGACGG CGACGCCCTG ACCGTCAGCC GCCGGCATGT GGCTGGGGTG
CGCAAGATGA TGCAGACGCT CTGA
|
|---|
| Protein sequence | MNVLIVDDEP QGRERLTRLL GELEGYTVLE PSATNGEEAL ALIESLKPDV VLLDIGMPGL
DGLQVAARLC EREAPPAVVF CTGDDEYGAE AFKDSTLSHV TKPFQPQALR DALRKAEKPN
RAQLAALTRP ANEGGGPRSH ISARTRKGIE LIPIPQVIYF IADHKYVTLR HEAGEVLLDE
PLKALEDEFG ERFVRIHRNA LVARERIERL QRTPLGHFQL YLKGLDGDAL TVSRRHVAGV
RKMMQTL
|
|---|
| |