| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0192 |
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| Symbol | |
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| ID | 5867889 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 231845 |
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| End bp | 232333 |
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| Gene Length | 489 bp |
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| Protein Length | 162 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641545273 |
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| Product | Hcp1 family type VI secretion system effector |
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| Protein accession | YP_001666443 |
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| Protein GI | 167031212 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.65069 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTTCG ATGCCTATAT TCAAATCGCG GAAATCGCTG GCGAAGCAAA AGACGAGCAA
TACAGCAACT GGATCGAGAT CCTCGGTTAC ACATTTGGTG CCAGCCAAAG CACCTCCGTC
ACCGCGAGTT CTGCAGGCGG CGCCACTTCC GGGCGCACCA CGCTGAGCAA TCTGACCTTC
ACCAAGTACC TGGACAACGC CAGTTGCAAA CTGCTCGAAG CCAGTTGCGC GGGGCAGCAC
CTGAAGGAAG TGAAGCTGGT CGTCTGCCGC GCCGGTAGCG ACAAGCTCAA GTACTACGAA
GTGGTGCTCG AGGAAGTGAT CATCGCCGAC TACGCACAAA GCGCGCATGC CGGTGTGCCG
ACTGAAATCG TTCAGCTCAA CTACGGCCGT ATCAAGACTA CCTACACCCG GCAGCAGCGC
GTCGACGGCA GTGCTGGCGG CAATGTGACC GGTGGCTGGG ACCGAATTGC CAACAAGAAG
TTTGCGTGA
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| Protein sequence | MAFDAYIQIA EIAGEAKDEQ YSNWIEILGY TFGASQSTSV TASSAGGATS GRTTLSNLTF
TKYLDNASCK LLEASCAGQH LKEVKLVVCR AGSDKLKYYE VVLEEVIIAD YAQSAHAGVP
TEIVQLNYGR IKTTYTRQQR VDGSAGGNVT GGWDRIANKK FA
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